BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47703.x
(306 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23820.1 68418.m02796 MD-2-related lipid recognition dom... 464 e-130
At5g23830.1 68418.m02797 MD-2-related lipid recognition dom... 141 4e-33
At5g23840.1 68418.m02799 MD-2-related lipid recognition dom... 94 8e-19
At5g23840.2 68418.m02798 MD-2-related lipid recognition dom... 94 8e-19
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide ... 70 1e-11
>At5g23820.1 68418.m02796 MD-2-related lipid recognition domain-containing
protein / ML domain-containing protein contains Pfam
profile PF02221: ML domain
Length = 819
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Minus
Query: 1 atcaaccagtaaatcgaagaaaagacatgctcgattgcttgttcatatcgctatcgatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atcaaccagtaaatcgaagaaaagacatgctcgattgcttgttcatatcgctatcgatat 735
Query: 61 cggtccaagattttaatttatttgttggacaacacaaaaagggaaaaggaaaagcaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cggtccaagattttaatttatttgttggacaacacaaaaagggaaaaggaaaagcaaagt 675
Query: 121 tgcgagagagactcatataatcaaaagagacttggaaacatcttttcatcagccaacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgcgagagagactcatataatcaaaagagacttggaaacatcttttcatcagccaacttg 615
Query: 181 actaaatagagacaaatgcaggagctggggcaggtactttgaagtcgacacaca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 actaaatagagacaaatgcaggagctggggcaggtactttgaagtcgacacaca 561
>At5g23830.1 68418.m02797 MD-2-related lipid recognition domain-containing
protein / ML domain-containing protein contains Pfam
profile PF02221: ML domain
Length = 734
Score = 141 bits (71), Expect = 4e-33
Identities = 156/182 (85%), Gaps = 13/182 (7%)
Strand = Plus / Minus
Query: 55 cgatatcggtccaagattttaatttatttgttggacaacacaaaaagggaaaaggaaaa- 113
|||||||||| |||| ||| ||||||||||||||||||||| ||| |||||||||
Sbjct: 675 cgatatcggttcaaggatttgatttatttgttggacaacacataaa----aaaggaaaaa 620
Query: 114 -gcaaagttgcgagagagactcatataatcaaaagagacttggaaacatcttttcatcag 172
|||| |||||| ||| ||||||||| ||| || |||||||||||||||||||||
Sbjct: 619 tgcaa----gcgagaaagagtcatataatgaaa---gagttggaaacatcttttcatcag 567
Query: 173 ccaacttgactaaatagagacaaatgcaggagctggggcaggtactttgaagtcgacaca 232
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 566 ccaacgtgactaaatagagacaaatgcagaagctgaggcaggtactttgaagtcgataca 507
Query: 233 ca 234
||
Sbjct: 506 ca 505
>At5g23840.1 68418.m02799 MD-2-related lipid recognition domain-containing
protein / ML domain-containing protein contains Pfam
profile PF02221: ML domain
Length = 816
Score = 93.7 bits (47), Expect = 8e-19
Identities = 70/77 (90%), Gaps = 3/77 (3%)
Strand = Plus / Minus
Query: 128 gagactcatataatcaaaagagacttggaaacatcttttcatcagccaacttgactaaat 187
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||
Sbjct: 662 gagactcatataatcaaa---gacttggaaacatcttttcatctgtcaacttgactacat 606
Query: 188 agagacaaatgcaggag 204
|||||| ||||||||||
Sbjct: 605 agagaccaatgcaggag 589
Score = 42.1 bits (21), Expect = 0.003
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 atcaaccagtaaatcgaagaaaagacatg 29
|||||| |||||||| |||||||||||||
Sbjct: 770 atcaacaagtaaatcaaagaaaagacatg 742
>At5g23840.2 68418.m02798 MD-2-related lipid recognition domain-containing
protein / ML domain-containing protein contains Pfam
profile PF02221: ML domain
Length = 906
Score = 93.7 bits (47), Expect = 8e-19
Identities = 70/77 (90%), Gaps = 3/77 (3%)
Strand = Plus / Minus
Query: 128 gagactcatataatcaaaagagacttggaaacatcttttcatcagccaacttgactaaat 187
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||
Sbjct: 752 gagactcatataatcaaa---gacttggaaacatcttttcatctgtcaacttgactacat 696
Query: 188 agagacaaatgcaggag 204
|||||| ||||||||||
Sbjct: 695 agagaccaatgcaggag 679
Score = 42.1 bits (21), Expect = 0.003
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 atcaaccagtaaatcgaagaaaagacatg 29
|||||| |||||||| |||||||||||||
Sbjct: 860 atcaacaagtaaatcaaagaaaagacatg 832
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family protein
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 1014
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 257 caaaatatttttgttacaaattcacatgaatataa 291
|||||||||||||||||||||||||||||||||||
Sbjct: 975 caaaatatttttgttacaaattcacatgaatataa 941
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9981
Number of Sequences: 29161
Number of extensions: 9981
Number of successful extensions: 844
Number of sequences better than 10.0: 26
length of query: 306
length of database: 44,058,232
effective HSP length: 16
effective length of query: 290
effective length of database: 43,591,656
effective search space: 12641580240
effective search space used: 12641580240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)