BLAST Search Results

BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47406.x
         (494 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP05953.1|  hypothetical protein [Schistosoma japonicum]       33   1.8  
gb|EAA15308.1|  hypothetical protein [Plasmodium yoelii yoelii]    33   1.8  

>gb|AAP05953.1| hypothetical protein [Schistosoma japonicum]
          Length = 107

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +1

Query: 223 YTFKRPMKCVKTNRLTFVCVCLW---------FCVYGLLFEFFSFFHCR 342
           + F R   C+ TN L F+CVC++           V  LLF  F+F  CR
Sbjct: 43  FFFHRSYVCIITNVLVFLCVCMYEVVIFSDVIVIVVHLLFILFTFSFCR 91



>gb|EAA15308.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 572

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = -3

Query: 465 IFTNNQIKQNRTKLPSLIGKKSNLAKNN-QVNRIFLK*IQR 346
           IF  N  K+N+  + +LI  K+NL+KNN +++ IF+K IQR
Sbjct: 286 IFYFNNDKENKQDIETLIKIKNNLSKNNIKLDIIFIKDIQR 326



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 19673200800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results