BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48376.f
(314 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31250.1 68417.m04436 leucine-rich repeat transmembrane ... 565 e-161
At1g77580.1 68414.m09033 myosin heavy chain-related low sim... 40 0.011
At5g25440.1 68418.m03021 protein kinase family protein cont... 36 0.17
At1g20830.1 68414.m02609 expressed protein 36 0.17
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)... 34 0.66
>At4g31250.1 68417.m04436 leucine-rich repeat transmembrane protein kinase,
putative receptor kinase, Petunia inflata, Patchx:G498278
Length = 2299
Score = 565 bits (285), Expect = e-161
Identities = 304/310 (98%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 1 ggaaatagctgaaaagtgaaaaaatcaacaaaagaacaaaagcttgaagctttactcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2289 ggaaatagctgaaaagtgaaaaaatcaacaaaagaacaaaagcttgaagctttactcatc 2230
Query: 61 aatcatatctgttaaaactagggggaaaaaaactgaatgcgaataaataaccctggcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2229 aatcatatctgttaaaactagggggaaaaaaactgaatgcgaataaataaccctggcaat 2170
Query: 121 aaaaaataaaaagtaattctcattacctacaaacaaagacacgaacttgatcaacaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169 aaaaaataaaaagtaattctcattacctacaaacaaagacacgaacttgatcaacaaata 2110
Query: 181 tcaaggaaacgagaattagatgaagantaagactagtggaaagaccngagagagatacag 240
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 2109 tcaaggaaacgagaattagatgaagaataagactagtggaaagaccagagagagatacag 2050
Query: 241 gcctttcaatgggaagctattacatgagtnagaactcctcagtcatagctcttgaaggac 300
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 2049 gcctttcaat-ggaagctattacatgagtgagaactcctcagtcatagctcttgaagaac 1991
Query: 301 ggtgatcacc 310
| ||||||||
Sbjct: 1990 gatgatcacc 1981
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity to SP|P08799
Myosin II heavy chain, non muscle {Dictyostelium
discoideum}
Length = 3395
Score = 40.1 bits (20), Expect = 0.011
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 31 aaagaacaaaagcttgaagcttta 54
|||||||||||||||||| |||||
Sbjct: 379 aaagaacaaaagcttgaaacttta 356
>At5g25440.1 68418.m03021 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 1114
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 118 aataaaaaataaaaagta 135
||||||||||||||||||
Sbjct: 798 aataaaaaataaaaagta 815
>At1g20830.1 68414.m02609 expressed protein
Length = 1231
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38 aaaagcttgaagctttac 55
||||||||||||||||||
Sbjct: 882 aaaagcttgaagctttac 899
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribosomal protein
S23, Fragaria x ananassa, PIR:S56673
Length = 697
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 37 caaaagcttgaagcttt 53
|||||||||||||||||
Sbjct: 548 caaaagcttgaagcttt 532
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,055
Number of Sequences: 29161
Number of extensions: 11055
Number of successful extensions: 1015
Number of sequences better than 10.0: 32
length of query: 314
length of database: 44,058,232
effective HSP length: 16
effective length of query: 298
effective length of database: 43,591,656
effective search space: 12990313488
effective search space used: 12990313488
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)