BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47604.f
(261 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)... 480 e-135
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)... 182 1e-45
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 137 5e-32
At3g07900.1 68416.m00965 expressed protein contains Pfam PF... 34 0.54
At2g31960.1 68415.m03905 glycosyl transferase family 48 pro... 34 0.54
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribosomal protein
S29, rat, PIR:S30298
Length = 483
Score = 480 bits (242), Expect = e-135
Identities = 255/258 (98%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 1 caaaataacaatggttctcaaaagtaaaaatttcaaaaactacaaaagcttaaaagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 caaaataacaatggttctcaaaagtaaaaatttcaaaaactacaaaagcttaaaagccat 298
Query: 61 acccatcgacgccttcatgtttatatcattaagcatcaatcatgaagttggtgcttgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acccatcgacgccttcatgtttatatcattaagcatcaatcatgaagttggtgcttgatt 238
Query: 121 aacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagcagt 178
Query: 181 tcaaaccatacttccggactagaccgtgcgagttcccgcacacacggcataaacgagatc 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggcataaacgagatc 118
Query: 241 caaggaccgtacttcttc 258
| ||||||||||||||||
Sbjct: 117 c-aggaccgtacttcttc 101
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribosomal protein
S29, rat, PIR:S30298
Length = 400
Score = 182 bits (92), Expect = 1e-45
Identities = 129/140 (92%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 119 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 178
||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct: 247 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 188
Query: 179 gttcaaaccatacttccggactagaccgtgcgagttcccgcacacacggcataaacgaga 238
|||||||||||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 187 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 128
Query: 239 tccaaggaccgtacttcttc 258
||| ||||||||||||||||
Sbjct: 127 tcc-aggaccgtacttcttc 109
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 439
Score = 137 bits (69), Expect = 5e-32
Identities = 121/137 (88%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 121 aacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagcagt 180
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 251 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagcagt 192
Query: 181 tcaaaccatacttccggactagaccgtgcgagttcccgcacacacggcataaacgagatc 240
| | ||||||||||| || ||| || || ||||| || |||||||||||||| ||||| |
Sbjct: 191 tgagaccatacttcctgattagcccatgggagtttccacacacacggcataagcgagaac 132
Query: 241 caaggaccgtacttctt 257
| ||||||||| |||||
Sbjct: 131 c-aggaccgtatttctt 116
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138: Plant protein
family. The function of this family of plant proteins is
unknown; previously annotated as 'auxin-independent
growth promoter -related' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 1892
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 133 tgaatccaatctcctta 149
|||||||||||||||||
Sbjct: 970 tgaatccaatctcctta 954
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein contains Pfam
profile: PF02364 1,3-beta-glucan synthase; contains
non-consensus splice aite AC at exon 33
Length = 5880
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 31 tttcaaaaactacaaaa 47
|||||||||||||||||
Sbjct: 864 tttcaaaaactacaaaa 880
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6494
Number of Sequences: 29161
Number of extensions: 6494
Number of successful extensions: 524
Number of sequences better than 10.0: 39
length of query: 261
length of database: 44,058,232
effective HSP length: 16
effective length of query: 245
effective length of database: 43,591,656
effective search space: 10679955720
effective search space used: 10679955720
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)