BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47584.f
(395 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15540.1 68416.m01970 auxin-responsive protein / indolea... 674 0.0
At1g52830.1 68414.m05973 auxin-responsive protein / indolea... 62 4e-09
At1g15580.1 68414.m01873 auxin-responsive protein / indolea... 46 2e-04
At2g22670.2 68415.m02687 auxin-responsive protein / indolea... 38 0.054
At2g22670.1 68415.m02686 auxin-responsive protein / indolea... 38 0.054
>At3g15540.1 68416.m01970 auxin-responsive protein / indoleacetic acid-induced
protein 19 (IAA19) identical to SP|O24409
Auxin-responsive protein IAA19 (Indoleacetic
acid-induced protein 19) {Arabidopsis thaliana}
Length = 968
Score = 674 bits (340), Expect = 0.0
Identities = 378/389 (97%), Gaps = 2/389 (0%)
Strand = Plus / Minus
Query: 7 cgaagagcttatcaagagcaaaggctagatcatcatagccttggntcgaaccaagatcca 66
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 470 cgaagagcttatcaagagcaaaggctagatcatcatagccttggctcgaaccaagatcca 411
Query: 67 tcttcctcaaataagggacaccatccatgctcactttcacataccctaaccccactttcg 126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcttcctcaaataaggcacaccatccatgctcactttcacataccctaaccccactttcg 351
Query: 127 tggtcgaagcttccttacagctgtttttcttccggtaagaacaaaccggtggccacccca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggtcgaagcttccttacagctgtttttcttccggtaagaacaaaccggtggccacccca 291
Query: 187 ccacctggtttttcgccgccggngaatcattaaccttctcagcgtcaccaccagatgaaa 246
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccacctggcttttcgccgccggcgaatcattaaccttctcagcgtcaccaccagatgaaa 231
Query: 247 ngacgccgctttcacattgatcactattactacccgacgacgtcatattcatctccggga 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 230 cgacgccgctttcacattgatcactattactacccgacgacgtcatattcatctccgtga 171
Query: 307 aaggtctcttctacatcatcttctctgacacatctctccccgggaagccccaatctcagc 366
||| |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 170 aagctctcttcttcatcatcttctctgccacatctctcccc-ggaagccccaatctcagc 112
Query: 367 tccgtttatctcaagcccgagtccttcct 395
|||| ||||||||||||||||||||||||
Sbjct: 111 tccg-ttatctcaagcccgagtccttcct 84
>At1g52830.1 68414.m05973 auxin-responsive protein / indoleacetic acid-induced
protein 6 (IAA6) nearly identical to SP|Q38824
Auxin-responsive protein IAA6 (Indoleacetic acid-induced
protein 6) {Arabidopsis thaliana}
Length = 829
Score = 61.9 bits (31), Expect = 4e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 52 tcgaaccaagatccatcttcctcaaataagggacaccatccatgctcactttcac 106
|||||||||| || |||||||||| || || |||||||||||||||||||||||
Sbjct: 425 tcgaaccaaggtcaatcttcctcatgtatggcacaccatccatgctcactttcac 371
>At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic acid-induced
protein 5 (IAA5) / auxin-induced protein (AUX2-27)
identical to SP|P33078 Auxin-responsive protein IAA5
(Indoleacetic acid-induced protein 5) (Auxin-induced
protein AUX2-27) {Arabidopsis thaliana}
Length = 591
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 157 tccggtaagaacaaaccggtggccaccccac 187
||||||| ||||||||||||||||| |||||
Sbjct: 193 tccggtacgaacaaaccggtggccaacccac 163
>At2g22670.2 68415.m02687 auxin-responsive protein / indoleacetic acid-induced
protein 8 (IAA8) identical to SP|Q38826 Auxin-responsive
protein IAA8 (Indoleacetic acid-induced protein 8)
{Arabidopsis thaliana}
Length = 1344
Score = 38.2 bits (19), Expect = 0.054
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85 caccatccatgctcactttcaca 107
|||||||||||||||| ||||||
Sbjct: 801 caccatccatgctcaccttcaca 779
>At2g22670.1 68415.m02686 auxin-responsive protein / indoleacetic acid-induced
protein 8 (IAA8) identical to SP|Q38826 Auxin-responsive
protein IAA8 (Indoleacetic acid-induced protein 8)
{Arabidopsis thaliana}
Length = 1418
Score = 38.2 bits (19), Expect = 0.054
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85 caccatccatgctcactttcaca 107
|||||||||||||||| ||||||
Sbjct: 853 caccatccatgctcaccttcaca 831
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,647
Number of Sequences: 29161
Number of extensions: 11647
Number of successful extensions: 880
Number of sequences better than 10.0: 27
length of query: 395
length of database: 44,058,232
effective HSP length: 17
effective length of query: 378
effective length of database: 43,562,495
effective search space: 16466623110
effective search space used: 16466623110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)