BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47581.f
(311 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JQ2244 ribosomal protein L10.e, cytosolic - Arabidopsi... 64 2e-10
ref|NP_563945.2| 60S ribosomal protein L10 (RPL10A) / Wilm'... 64 2e-10
gb|AAK55705.1| At1g14320/F14L17_28 [Arabidopsis thaliana]|g... 64 2e-10
ref|NP_174013.1| 60S ribosomal protein L10 (RPL10B) [Arabid... 64 3e-10
pir||F96691 probable 60S ribosomal protein L10 [imported] -... 60 1e-08
ref|NP_564878.1| 60S ribosomal protein L10 (RPL10C) [Arabid... 60 1e-08
sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10|gi|6984130|g... 53 2e-06
sp|O22431|RL10_PINTA 60S ribosomal protein L10 (Wilm's tumo... 52 3e-06
sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM)|gi|190... 51 5e-06
sp|Q40592|RL10_TOBAC 60S RIBOSOMAL PROTEIN L10 (QM PROTEIN ... 50 1e-05
>pir||JQ2244 ribosomal protein L10.e, cytosolic - Arabidopsis
thaliana|gi|17682|emb|CAA78856.1| Wilm's tumor
suppressor homologue [Arabidopsis thaliana]
Length = 220
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 2e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 203 HGPLANRQPGSAFLPAHY 220
>ref|NP_563945.2| 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor
protein-related [Arabidopsis
thaliana]|gi|25313188|pir||E86277 hypothetical protein
F14L17.9 - Arabidopsis
thaliana|gi|7262674|gb|AAF43932.1| Strong similarity,
practically identical, to a 60S Ribosomal Protein L10
(Wilm's Tumor Suppressor Protein Homolog) from
Arabidopsis thaliana gi|1172806, and contains a
Ribosomal L10 PF|00826 domain. ESTs gb|Z18472,
gb|T76209, gb|N65098, gb|T43013, gb|T46279, gb|AA394948,
gb|AA713166, gb|T44895, gb|AA042691 come from this
gene|gi|15028019|gb|AAK76540.1| putative tumor
suppressor protein [Arabidopsis
thaliana]|gi|16226263|gb|AAL16118.1| At1g14320/F14L17_28
[Arabidopsis thaliana]|gi|16226713|gb|AAL16239.1|
At1g14320/F14L17_28 [Arabidopsis
thaliana]|gi|21281241|gb|AAM45037.1| putative tumor
suppressor protein [Arabidopsis
thaliana]|gi|23397080|gb|AAN31825.1| putative tumor
suppressor [Arabidopsis thaliana]
Length = 220
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 2e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 203 HGPLANRQPGSAFLPAHY 220
>gb|AAK55705.1| At1g14320/F14L17_28 [Arabidopsis
thaliana]|gi|15215903|gb|AAK91495.1| At1g14320/F14L17_28
[Arabidopsis thaliana]
Length = 119
Score = 64.3 bits (155), Expect(2) = 2e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKRVVPDGVN K LS
Sbjct: 41 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 100
Query: 181 C 183
C
Sbjct: 101 C 101
Score = 21.6 bits (44), Expect(2) = 2e-10
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 183 HGLWLTRKPGSAFC-SHY 233
HG R+PGSAF +HY
Sbjct: 102 HGPLANRQPGSAFLPAHY 119
>ref|NP_174013.1| 60S ribosomal protein L10 (RPL10B) [Arabidopsis
thaliana]|gi|19884272|sp|Q08770|RL10_ARATH 60S ribosomal
protein L10 (Wilm's tumor suppressor protein
homolog)|gi|25313180|pir||A86396 60s ribosomal protein
L10 [imported] - Arabidopsis
thaliana|gi|4262180|gb|AAD14497.1|
29621|gi|21592869|gb|AAM64819.1| putative 60s ribosomal
protein L10 [Arabidopsis thaliana]
Length = 221
Score = 63.5 bits (153), Expect(2) = 3e-10
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HGHH QEAL RAKFK P K ++ G + ++ ++ QEKR+VPDGVN K LS
Sbjct: 142 DAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLS 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 21.6 bits (44), Expect(2) = 3e-10
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 HGLWLTRKPGSAFCS 227
HG R+PGSAF S
Sbjct: 203 HGPLANRQPGSAFLS 217
>pir||F96691 probable 60S ribosomal protein L10 [imported] - Arabidopsis
thaliana|gi|12322292|gb|AAG51174.1| 60S ribosomal
protein L10, putative [Arabidopsis thaliana]
Length = 184
Score = 60.1 bits (144), Expect = 1e-08
Identities = 33/58 (56%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
Frame = +2
Query: 56 PGRQKIIVSRKWGFTKFNRADFTKL--SKRXXXXXXXXXXXXXHAWPLANPQAGKCFL 223
PGRQKIIVSRKWGFTKFNRA++TKL KR H PLAN Q G F+
Sbjct: 123 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHG-PLANRQPGSAFI 179
Score = 50.8 bits (120), Expect(2) = 2e-06
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HG H QEAL RAKFK P K ++ G + ++ ++ KR+VPDGVN K LS
Sbjct: 105 DNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLS 164
Score = 21.6 bits (44), Expect(2) = 2e-06
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 HGLWLTRKPGSAFCS 227
HG R+PGSAF S
Sbjct: 166 HGPLANRQPGSAFIS 180
>ref|NP_564878.1| 60S ribosomal protein L10 (RPL10C) [Arabidopsis
thaliana]|gi|14194141|gb|AAK56265.1| At1g66580/T12I7_3
[Arabidopsis thaliana]|gi|15777885|gb|AAL05903.1|
At1g66580/T12I7_3 [Arabidopsis
thaliana]|gi|21593025|gb|AAM64974.1| 60S ribosomal
protein L10, putative [Arabidopsis thaliana]
Length = 221
Score = 60.1 bits (144), Expect = 1e-08
Identities = 33/58 (56%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
Frame = +2
Query: 56 PGRQKIIVSRKWGFTKFNRADFTKL--SKRXXXXXXXXXXXXXHAWPLANPQAGKCFL 223
PGRQKIIVSRKWGFTKFNRA++TKL KR H PLAN Q G F+
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHG-PLANRQPGSAFI 216
Score = 50.8 bits (120), Expect(2) = 2e-06
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D HG H QEAL RAKFK P K ++ G + ++ ++ KR+VPDGVN K LS
Sbjct: 142 DNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLS 201
Score = 21.6 bits (44), Expect(2) = 2e-06
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 HGLWLTRKPGSAFCS 227
HG R+PGSAF S
Sbjct: 203 HGPLANRQPGSAFIS 217
>sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10|gi|6984130|gb|AAF34765.1| 60S ribosomal
protein L10 [Euphorbia esula]
Length = 220
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/61 (40%), Positives = 38/61 (61%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D + H+ QEAL RAKFK P K ++ G ++ ++ +++ E R++PDGVN KLL
Sbjct: 142 DNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLG 201
Query: 181 C 183
C
Sbjct: 202 C 202
>sp|O22431|RL10_PINTA 60S ribosomal protein L10 (Wilm's tumor suppressor
homolog)|gi|7447295|pir||T07957 probable ribosomal
protein L10.e - loblolly pine|gi|2317762|gb|AAB66347.1|
Wilm's tumor supressor homolog [Pinus taeda]
Length = 228
Score = 52.0 bits (123), Expect = 3e-06
Identities = 27/61 (44%), Positives = 36/61 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D H +H QEAL RAKFK P K ++ G + ++ + + E R+VPDGVN KLL
Sbjct: 142 DNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLG 201
Query: 181 C 183
C
Sbjct: 202 C 202
Score = 48.5 bits (114), Expect = 3e-05
Identities = 25/59 (42%), Positives = 35/59 (58%), Gaps = 1/59 (1%)
Frame = +2
Query: 56 PGRQKIIVSRKWGFTKFNRADFTKL-SKRXXXXXXXXXXXXXHAWPLANPQAGKCFLQP 229
PGR+KIIV+RKWGFTK+ RAD+ K ++ PL+N + G+ FL+P
Sbjct: 160 PGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLKP 218
>sp|P93847|RL10_SOLME 60S RIBOSOMAL PROTEIN L10 (EQM)|gi|1902894|dbj|BAA19462.1| QM
family protein [Solanum melongena]
Length = 219
Score = 51.2 bits (121), Expect = 5e-06
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 56 PGRQKIIVSRKWGFTKFNRADFTKL-SKRXXXXXXXXXXXXXHAWPLANPQAGKCFL 223
PGRQKIIVSRKWGFTKF+R D+ K S+ + PLA Q G+ FL
Sbjct: 160 PGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFL 216
Score = 47.0 bits (110), Expect = 9e-05
Identities = 25/59 (42%), Positives = 35/59 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLL 177
D + +H QEAL RAKFK P K ++ G + ++ + + E R+VPDGVN KLL
Sbjct: 142 DGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLL 200
>sp|Q40592|RL10_TOBAC 60S RIBOSOMAL PROTEIN L10 (QM PROTEIN
HOMOLOG)|gi|629704|pir||S44144 ribosomal protein L10.e,
cytosolic - common tobacco
(fragment)|gi|473104|emb|CAA78461.1| HOMOLOGIE with
Human WILM's tumor-related protein HUMQM [Nicotiana
tabacum]
Length = 150
Score = 50.1 bits (118), Expect = 1e-05
Identities = 26/61 (42%), Positives = 36/61 (58%)
Frame = +1
Query: 1 DTHGHHDQEALPRAKFKSPWSSKDYCQQEMGLHEV*QS*LHQVEQEKRVVPDGVNXKLLS 180
D + +H QEAL RAKFK P K ++ G + ++ + + E R+VPDGVN KLL
Sbjct: 71 DGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLG 130
Query: 181 C 183
C
Sbjct: 131 C 131
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 79
effective length of database: 479,984,376
effective search space used: 11519625024
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)