BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47575.f
         (317 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02840.1  68417.m00384 small nuclear ribonucleoprotein D1...   436   e-122
At5g45240.1  68418.m05552 disease resistance protein (TIR-NB...    34   0.67 
At4g12275.1  68417.m01945 reverse transcriptase-related low ...    34   0.67 
At5g51150.1  68418.m06342 expressed protein similar to unkno...    32   2.6  
At5g16080.1  68418.m01879 expressed protein similar to PrMC3...    32   2.6  

>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, putative / snRNP
           core protein D1, putative / Sm protein D1, putative
           similar to small nuclear ribonucleoprotein Sm D1 (snRNP
           core protein D1, Sm-D1, Sm-D autoantigen) [Mouse]
           SWISS-PROT:P13641
          Length = 683

 Score =  436 bits (220), Expect = e-122
 Identities = 289/314 (92%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagataacaagagtttgtcttagtgacaccaaatctcactacaagatagatcttttacaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagataacaagaatttgtcttagtgacaccaaatctcactacaagatagatcttttacaa 502

                                                                       
Query: 61  tcctgctgttacaaaccaaaaaggaccagagtgnngattactgnaaaatgtttaacgacc 120
           |||||||||||||||||||||||||||||| |   |||||||| |||||| |||||||||
Sbjct: 501 tcctgctgttacaaaccaaaaaggaccagacttttgattactgcaaaatgcttaacgacc 442

                                                                       
Query: 121 accacgggcacgtccacgatctcttccacgaccacgtccccgacctggtggaatcttacc 180
           ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 accacggccacgtccacgacctcttccacgaccacgtccccgacctgctggaatcttacc 382

                                                                       
Query: 181 tgcagttggctgggtgggtttgtttcttggngtttcttcaaccagcattgtctccagatt 240
           |||||||||||   |||||||| ||||||| || |||||||||||||  |||||||||||
Sbjct: 381 tgcagttggctttttgggtttgattcttggagtgtcttcaaccagcaaagtctccagatt 322

                                                                       
Query: 241 catactgtccggaagattataatagcgantgttgcctccccnaacacttaagtggtctaa 300
           || ||||||||||||| ||||||||||| |||||  |||||  |||||||||||||||||
Sbjct: 321 caaactgtccggaagaatataatagcgaatgttgtttcccctgacacttaagtggtctaa 262

                         
Query: 301 tgtaactggattct 314
           ||||||||||||||
Sbjct: 261 tgtaactggattct 248



>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR class),
           putative domain signature TIR-NBS-LRR exists, suggestive
           of a disease resistance protein.
          Length = 2439

 Score = 34.2 bits (17), Expect = 0.67
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 133 tccacgatctcttccac 149
           |||||||||||||||||
Sbjct: 431 tccacgatctcttccac 415



>At4g12275.1 68417.m01945 reverse transcriptase-related low similarity to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 1191

 Score = 34.2 bits (17), Expect = 0.67
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 182 gcagttggctgggtgggtttg 202
           ||||||||||||| |||||||
Sbjct: 785 gcagttggctgggagggtttg 805



>At5g51150.1 68418.m06342 expressed protein similar to unknown protein
            (gb|AAD46013.1)
          Length = 1959

 Score = 32.2 bits (16), Expect = 2.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 72   caaaccaaaaaggacc 87
            ||||||||||||||||
Sbjct: 1701 caaaccaaaaaggacc 1716



>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus radiata]
           GI:5487873
          Length = 1304

 Score = 32.2 bits (16), Expect = 2.6
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 137 cgatctcttccacgac 152
           ||||||||||||||||
Sbjct: 148 cgatctcttccacgac 133



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7255
Number of Sequences: 29161
Number of extensions: 7255
Number of successful extensions: 466
Number of sequences better than 10.0: 10
length of query: 317
length of database: 44,058,232
effective HSP length: 16
effective length of query: 301
effective length of database: 43,591,656
effective search space: 13121088456
effective search space used: 13121088456
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)