BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z46680.f
(304 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00304554.1| COG0407: Uroporphyrinogen-III decarboxyl... 114 4e-25
sp|P42503|DCUP_RHOCA Uroporphyrinogen decarboxylase (URO-D)... 100 5e-21
ref|NP_105348.1| uroporphyrinogen decarboxylase [Mesorhizob... 100 5e-21
ref|NP_699041.1| uroporphyrinogen decarboxylase [Brucella s... 99 2e-20
ref|NP_538919.1| UROPORPHYRINOGEN DECARBOXYLASE [Brucella m... 99 2e-20
ref|ZP_00008163.1| COG0407: Uroporphyrinogen-III decarboxyl... 98 5e-20
ref|NP_355761.1| AGR_C_5140p [Agrobacterium tumefaciens str... 95 3e-19
ref|NP_387447.1| PROBABLE UROPORPHYRINOGEN DECARBOXYLASE PR... 94 9e-19
ref|ZP_00197616.1| COG0407: Uroporphyrinogen-III decarboxyl... 92 2e-18
ref|ZP_00271243.1| COG0407: Uroporphyrinogen-III decarboxyl... 90 1e-17
>ref|ZP_00304554.1| COG0407: Uroporphyrinogen-III decarboxylase [Novosphingobium
aromaticivorans DSM 12444]
Length = 341
Score = 114 bits (286), Expect = 4e-25
Identities = 57/95 (60%), Positives = 64/95 (67%)
Frame = -2
Query: 285 LQAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYG 106
L A P RL P+YETV +V A L P+TT LGFAGSPWTVATYMVAG GSRD +TR AY
Sbjct: 107 LVAVPGRLSPIYETVAKVKAQLSPETTLLGFAGSPWTVATYMVAGEGSRDHHDTRALAYR 166
Query: 105 DPXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
DP TI+YLS Q+EAG E +QLFD
Sbjct: 167 DPSAFQAIIDAITEVTIEYLSGQVEAGAEGLQLFD 201
>sp|P42503|DCUP_RHOCA Uroporphyrinogen decarboxylase (URO-D)
(UPD)|gi|567081|gb|AAA97435.1| uroporphyrinogen
decarboxylase [Rhodobacter capsulatus]
Length = 344
Score = 100 bits (250), Expect = 5e-21
Identities = 48/97 (49%), Positives = 62/97 (63%)
Frame = -2
Query: 291 KGLQAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFA 112
KG ++L PVYET + ++ LP +TTF+GFAG PWTVATYM+AG GS+DQ +F
Sbjct: 109 KGKDDIHDKLAPVYETCKILSRELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKFK 168
Query: 111 YGDPXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
D +TI+YLSKQ+EAG E V+LFD
Sbjct: 169 DTDRAAFSALIDAVTVATIEYLSKQVEAGCEVVKLFD 205
>ref|NP_105348.1| uroporphyrinogen decarboxylase [Mesorhizobium loti
MAFF303099]|gi|23814012|sp|Q98DY6|DCUP_RHILO
Uroporphyrinogen decarboxylase (URO-D)
(UPD)|gi|14024531|dbj|BAB51134.1| uroporphyrinogen
decarboxylase [Mesorhizobium loti]
Length = 343
Score = 100 bits (250), Expect = 5e-21
Identities = 48/88 (54%), Positives = 60/88 (67%)
Frame = -2
Query: 264 LEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXXXX 85
LEPVYETVR++ A LP +TT +GF G+PWTVATYM+AGHG+ DQ R FAY +P
Sbjct: 117 LEPVYETVRRLRAKLPDETTLIGFCGAPWTVATYMIAGHGTPDQAPARLFAYREPAAFQH 176
Query: 84 XXXXXATSTIDYLSKQIEAGVEAVQLFD 1
A + YL +QIEAG + VQ+FD
Sbjct: 177 LLKVLADHSAAYLIRQIEAGADVVQIFD 204
>ref|NP_699041.1| uroporphyrinogen decarboxylase [Brucella suis
1330]|gi|38257629|sp|Q8FY24|DCUP_BRUSU Uroporphyrinogen
decarboxylase (URO-D) (UPD)|gi|23348946|gb|AAN30956.1|
uroporphyrinogen decarboxylase [Brucella suis 1330]
Length = 341
Score = 99.0 bits (245), Expect = 2e-20
Identities = 49/94 (52%), Positives = 61/94 (64%)
Frame = -2
Query: 282 QAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGD 103
+ +RLEPVYETVR V LP +TT LGF G+PWTVATYM+AGHG+ DQ R FAY
Sbjct: 109 EGVAKRLEPVYETVRLVREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRF 168
Query: 102 PXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
P A + +YL +Q+ AG +AVQ+FD
Sbjct: 169 PEAFEKLLNDLADVSAEYLIEQLGAGADAVQIFD 202
>ref|NP_538919.1| UROPORPHYRINOGEN DECARBOXYLASE [Brucella melitensis
16M]|gi|23813997|sp|Q8YJT1|DCUP_BRUME Uroporphyrinogen
decarboxylase (URO-D) (UPD)|gi|25291026|pir||AD3252
uroporphyrinogen decarboxylase (EC 4.1.1.37) [imported]
- Brucella melitensis (strain
16M)|gi|17981867|gb|AAL51183.1| UROPORPHYRINOGEN
DECARBOXYLASE [Brucella melitensis 16M]
Length = 341
Score = 99.0 bits (245), Expect = 2e-20
Identities = 49/94 (52%), Positives = 61/94 (64%)
Frame = -2
Query: 282 QAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGD 103
+ +RLEPVYETVR V LP +TT LGF G+PWTVATYM+AGHG+ DQ R FAY
Sbjct: 109 EGVAKRLEPVYETVRLVREQLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFAYRF 168
Query: 102 PXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
P A + +YL +Q+ AG +AVQ+FD
Sbjct: 169 PEAFEKLLNDLADVSAEYLIEQLGAGADAVQIFD 202
>ref|ZP_00008163.1| COG0407: Uroporphyrinogen-III decarboxylase [Rhodobacter
sphaeroides]
Length = 343
Score = 97.8 bits (242), Expect = 5e-20
Identities = 49/97 (50%), Positives = 60/97 (61%)
Frame = -2
Query: 291 KGLQAAPERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFA 112
KG E L PVYET R +A LP +TTF+GFAG PWTVATYM+AG GS+DQ +
Sbjct: 108 KGRDDIHETLAPVYETCRILARELPKETTFIGFAGMPWTVATYMIAGRGSKDQAAAHKLK 167
Query: 111 YGDPXXXXXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
D +TI+YL+KQ+EAG E V+LFD
Sbjct: 168 DTDRPAFEALMDRVTEATIEYLAKQVEAGCEVVKLFD 204
>ref|NP_355761.1| AGR_C_5140p [Agrobacterium tumefaciens str.
C58]|gi|17936710|ref|NP_533500.1| uroporphyrinogen
decarboxylase [Agrobacterium tumefaciens str.
C58]|gi|23813934|sp|Q8UBL6|DCUP_AGRT5 Uroporphyrinogen
decarboxylase (URO-D) (UPD)|gi|25291024|pir||A97699
uroporphyrinogen decarboxylase (uro-d) (upd) [imported]
- Agrobacterium tumefaciens (strain C58,
Cereon)|gi|25291025|pir||AB2925 uroporphyrinogen
decarboxylase [imported] - Agrobacterium tumefaciens
(strain C58, Dupont)|gi|15158065|gb|AAK88546.1|
AGR_C_5140p [Agrobacterium tumefaciens str.
C58]|gi|17741356|gb|AAL43816.1| uroporphyrinogen
decarboxylase [Agrobacterium tumefaciens str. C58]
Length = 344
Score = 95.1 bits (235), Expect = 3e-19
Identities = 45/88 (51%), Positives = 57/88 (64%)
Frame = -2
Query: 264 LEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXXXX 85
L PV+ETV ++ LP +TT LGF G+PWTVATYM+AGHG+ DQ R F Y +P
Sbjct: 116 LSPVFETVSRLRTSLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFGYQEPAAMEK 175
Query: 84 XXXXXATSTIDYLSKQIEAGVEAVQLFD 1
A + DYL QI+AG +AVQ+FD
Sbjct: 176 LLALLAEVSADYLVAQIDAGADAVQIFD 203
>ref|NP_387447.1| PROBABLE UROPORPHYRINOGEN DECARBOXYLASE PROTEIN [Sinorhizobium
meliloti 1021]|gi|15076367|emb|CAC47920.1| PROBABLE
UROPORPHYRINOGEN DECARBOXYLASE PROTEIN [Sinorhizobium
meliloti]
Length = 319
Score = 93.6 bits (231), Expect = 9e-19
Identities = 46/88 (52%), Positives = 57/88 (64%)
Frame = -2
Query: 264 LEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXXXX 85
L PV+ETV ++ LP +TT LGF G+PWTVATYM+AG G+ DQ R FAY P
Sbjct: 94 LAPVFETVSRLRRELPTETTLLGFCGAPWTVATYMIAGRGTPDQAPARLFAYRHPKAFER 153
Query: 84 XXXXXATSTIDYLSKQIEAGVEAVQLFD 1
A + DYL KQI+AG +AVQ+FD
Sbjct: 154 LLTLLADISADYLVKQIDAGADAVQIFD 181
>ref|ZP_00197616.1| COG0407: Uroporphyrinogen-III decarboxylase [Mesorhizobium sp.
BNC1]
Length = 347
Score = 92.4 bits (228), Expect = 2e-18
Identities = 42/89 (47%), Positives = 58/89 (64%)
Frame = -2
Query: 267 RLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXXX 88
RL+PVYETVR++ + L +T +GF G+PWTVATYM+AG G+ DQ R F Y P
Sbjct: 120 RLQPVYETVRRLRSELSEETALIGFCGAPWTVATYMIAGRGTPDQAPARLFGYRHPKEFS 179
Query: 87 XXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
+ ++ DYL +QI+ G +AVQ+FD
Sbjct: 180 ELLDTISAASADYLIRQIDEGADAVQIFD 208
>ref|ZP_00271243.1| COG0407: Uroporphyrinogen-III decarboxylase [Rhodospirillum rubrum]
Length = 348
Score = 89.7 bits (221), Expect = 1e-17
Identities = 42/90 (46%), Positives = 57/90 (62%)
Frame = -2
Query: 270 ERLEPVYETVRQVAAVLPPKTTFLGFAGSPWTVATYMVAGHGSRDQGETRRFAYGDPXXX 91
ERL PV+ETVR +A+ +P T +GFAG+PWTVATYM+ G S+D + + Y P
Sbjct: 120 ERLGPVFETVRGLASAIPSTTALIGFAGAPWTVATYMLEGGSSKDFSVAKSWIYSRPDDF 179
Query: 90 XXXXXXXATSTIDYLSKQIEAGVEAVQLFD 1
++T DYL QI+AG EA+Q+FD
Sbjct: 180 AALMEVLISATTDYLIAQIDAGAEAIQIFD 209
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 76
effective length of database: 485,670,270
effective search space used: 11656086480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)