BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48377.r
(325 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04492 protein kinase homolog F8F16.70 - Arabidopsis t... 163 9e-40
ref|NP_567870.1| leucine-rich repeat transmembrane protein ... 146 1e-34
pir||T07865 receptor-like protein kinase PRK1 - tomato|gi|3... 100 1e-20
pir||T07862 receptor-like protein kinase PRK2 - tomato|gi|3... 97 8e-20
ref|NP_188654.2| leucine-rich repeat transmembrane protein ... 94 8e-19
gb|AAO22728.1| putative leucine-rich repeat transmembrane p... 94 8e-19
gb|AAK28346.1| receptor-like protein kinase 1 [Zea mays] 93 1e-18
gb|AAA33715.1| receptor kinase 91 4e-18
ref|NP_175476.2| leucine-rich repeat transmembrane protein ... 91 4e-18
dbj|BAD08761.1| putative receptor-like protein kinase [Oryz... 91 5e-18
>pir||T04492 protein kinase homolog F8F16.70 - Arabidopsis
thaliana|gi|2827520|emb|CAA16528.1| receptor kinase-like
protein [Arabidopsis
thaliana]|gi|7270027|emb|CAB79843.1| receptor
kinase-like protein [Arabidopsis thaliana]
Length = 951
Score = 163 bits (412), Expect = 9e-40
Identities = 85/107 (79%), Positives = 86/107 (79%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS
Sbjct: 400 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 459
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
K +NRTPGQVVLDWPIRLKIVRGVTRG
Sbjct: 460 K---------------------SNRTPGQVVLDWPIRLKIVRGVTRG 485
>ref|NP_567870.1| leucine-rich repeat transmembrane protein kinase, putative
[Arabidopsis thaliana]
Length = 676
Score = 146 bits (368), Expect = 1e-34
Identities = 78/107 (72%), Positives = 78/107 (72%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLH
Sbjct: 400 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLH------- 452
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
ANRTPGQVVLDWPIRLKIVRGVTRG
Sbjct: 453 ----------------------ANRTPGQVVLDWPIRLKIVRGVTRG 477
>pir||T07865 receptor-like protein kinase PRK1 -
tomato|gi|3015488|gb|AAC12254.1| receptor-like protein
kinase [Lycopersicon esculentum]
Length = 669
Score = 99.8 bits (247), Expect = 1e-20
Identities = 50/107 (46%), Positives = 68/107 (62%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+N+G+E+F++HM++IGRLSH NLLP++A+YYRKEEKLLV+ Y++N SLA LHG
Sbjct: 402 NNVGKEDFHEHMRRIGRLSHKNLLPVVAYYYRKEEKLLVSEYVNNVSLAVHLHG------ 455
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
N++ GQ LDWP RLKIV+GV +G
Sbjct: 456 -----------------------NKSRGQPSLDWPTRLKIVKGVAKG 479
>pir||T07862 receptor-like protein kinase PRK2 -
tomato|gi|3015486|gb|AAC12253.1| receptor-like protein
kinase [Lycopersicon esculentum]
Length = 642
Score = 97.1 bits (240), Expect = 8e-20
Identities = 49/107 (45%), Positives = 67/107 (61%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+ +G+E+F++HM+++GRLSH NLLP+IAFYYRKEEKLLV Y++N SLA LHGN
Sbjct: 378 NKVGKEDFHEHMRRLGRLSHKNLLPVIAFYYRKEEKLLVFEYVNNVSLAVYLHGN----- 432
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
+++ G LDWP RLKIV+GV++G
Sbjct: 433 -----------------------SKSRGNQSLDWPTRLKIVKGVSKG 456
>ref|NP_188654.2| leucine-rich repeat transmembrane protein kinase, putative
[Arabidopsis thaliana]|gi|9293975|dbj|BAB01878.1|
receptor protein kinase [Arabidopsis thaliana]
Length = 679
Score = 93.6 bits (231), Expect = 8e-19
Identities = 45/107 (42%), Positives = 65/107 (60%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+N+GR+EF++HM+++GRL HPNLLP++A+YYR+EEKLL+ ++ N SLA+ LH
Sbjct: 406 NNVGRDEFHEHMRRLGRLKHPNLLPIVAYYYRREEKLLIAEFMPNRSLASHLH------- 458
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
AN + Q LDWP RLKI++GV +G
Sbjct: 459 ----------------------ANHSVDQPGLDWPTRLKIIQGVAKG 483
>gb|AAO22728.1| putative leucine-rich repeat transmembrane protein kinase
[Arabidopsis thaliana]
Length = 453
Score = 93.6 bits (231), Expect = 8e-19
Identities = 45/107 (42%), Positives = 65/107 (60%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+N+GR+EF++HM+++GRL HPNLLP++A+YYR+EEKLL+ ++ N SLA+ LH
Sbjct: 180 NNVGRDEFHEHMRRLGRLKHPNLLPIVAYYYRREEKLLIAEFMPNRSLASHLH------- 232
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
AN + Q LDWP RLKI++GV +G
Sbjct: 233 ----------------------ANHSVDQPGLDWPTRLKIIQGVAKG 257
>gb|AAK28346.1| receptor-like protein kinase 1 [Zea mays]
Length = 750
Score = 92.8 bits (229), Expect = 1e-18
Identities = 49/106 (46%), Positives = 64/106 (60%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+ +G+E+F +HM+++GRLSHPNLLPL+A+YYRKEEKLL+ +Y+ N SLANLLHG
Sbjct: 458 NRVGKEDFEEHMRRLGRLSHPNLLPLVAYYYRKEEKLLIHDYVPNRSLANLLHGG----- 512
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTR 320
DE R + L W RLKIV+GV R
Sbjct: 513 ------------GDE---------RGMKKAALHWAARLKIVKGVAR 537
>gb|AAA33715.1| receptor kinase
Length = 720
Score = 91.3 bits (225), Expect = 4e-18
Identities = 47/106 (44%), Positives = 64/106 (60%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+++ +E+F++HM+++GRL+HPNLLPL+A+YYRKEEKLLV +Y SNGSLA+ LHGN
Sbjct: 468 NHVAKEDFHEHMRRLGRLTHPNLLPLVAYYYRKEEKLLVYDYASNGSLASHLHGN----- 522
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTR 320
Q LDW RLKIV+GV +
Sbjct: 523 ----------------------------QSRLDWSSRLKIVKGVAK 540
>ref|NP_175476.2| leucine-rich repeat transmembrane protein kinase, putative
[Arabidopsis thaliana]|gi|25405384|pir||F96542 probable
protein kinase [imported] - Arabidopsis
thaliana|gi|9454551|gb|AAF87874.1| Putative protein
kinase [Arabidopsis thaliana]|gi|12322337|gb|AAG51193.1|
protein kinase, putative [Arabidopsis
thaliana]|gi|26450777|dbj|BAC42497.1| putative
receptor-like protein kinase [Arabidopsis
thaliana]|gi|29029018|gb|AAO64888.1| At1g50610
[Arabidopsis thaliana]
Length = 686
Score = 91.3 bits (225), Expect = 4e-18
Identities = 46/107 (42%), Positives = 66/107 (60%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+N+GR+EF++HM+++GRL+HPN+LPL+A+YYR+EEKLLVT ++ N SLA+ LH
Sbjct: 409 NNVGRDEFHEHMRRLGRLNHPNILPLVAYYYRREEKLLVTEFMPNSSLASHLH------- 461
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTRG 323
AN + G LDW RLKI++GV +G
Sbjct: 462 ----------------------ANNSAG---LDWITRLKIIKGVAKG 483
>dbj|BAD08761.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]|gi|42409181|dbj|BAD10447.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 717
Score = 90.9 bits (224), Expect = 5e-18
Identities = 45/106 (42%), Positives = 64/106 (59%)
Frame = +3
Query: 3 SNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLANLLHGNIMELS 182
+ +G+E+F +HM+++GRLSHPNLLPLI++YYRKEEKLL+ +Y+ N SLA+LLHG +
Sbjct: 442 NRVGKEDFEEHMRRLGRLSHPNLLPLISYYYRKEEKLLIHDYVPNKSLAHLLHGEGRRVK 501
Query: 183 KCLFIFIQ*NEESDEFCWIDFAANRTPGQVVLDWPIRLKIVRGVTR 320
K ++ WP RLK+V+GV R
Sbjct: 502 K-----------------------------LVHWPARLKLVKGVAR 518
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 83
effective length of database: 472,403,184
effective search space used: 11337676416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)