BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47647.r
         (243 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_701366.1|  erythrocyte membrane protein 1 (PfEMP1) [P...    30   9.7  

>ref|NP_701366.1| erythrocyte membrane protein 1 (PfEMP1) [Plasmodium falciparum
           3D7]|gi|23496532|gb|AAN36090.1| erythrocyte membrane
           protein 1 (PfEMP1) [Plasmodium falciparum 3D7]
          Length = 2178

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  FKNWFDKKKIKRWXDEDPKFKELKXMIKDG 158
           FK W ++KK K W      FK+ K MI+ G
Sbjct: 640 FKKWVEQKKEKEWKAIKKHFKKQKDMIETG 669



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 56
effective length of database: 523,576,230
effective search space used: 12565829520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)