BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z47630.r
(338 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 628 e-180
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)... 192 1e-48
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)... 176 8e-44
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 prote... 36 0.18
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finge... 34 0.71
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 439
Score = 628 bits (317), Expect = e-180
Identities = 324/325 (99%), Gaps = 1/325 (0%)
Strand = Plus / Plus
Query: 2 agagagcagtcgacaatcatgggtcactccaacgtctggaattctcatcctaagaaatac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agagagcagtcgacaatcatgggtcactccaacgtctggaattctcatcctaagaaatac 124
Query: 62 ggtcctggttctcgcttatgccgtgtgtgtggaaactcccatgggctaatcaggaagtat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggtcctggttctcgcttatgccgtgtgtgtggaaactcccatgggctaatcaggaagtat 184
Query: 122 ggtctcaactgctgcagacagtgtttccgtagcaacgccaaggaaatcggattcattaag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtctcaactgctgcagacagtgtttccgtagcaacgccaaggaaatcggattcattaag 244
Query: 182 taccgttgatgatcgatgttgttcacacaggagcatcatgtcttttgagttttaaacttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taccgttgatgatcgatgttgttcacacaggagcatcatgtcttttgagttttaaacttt 304
Query: 242 gcgttgaacttgtaatcgatttatcgacattgaactaatttgattatg-ttttgtgctgt 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 gcgttgaacttgtaatcgatttatcgacattgaactaatttgattatgtttttgtgctgt 364
Query: 301 tgaatctacaagttactttgttcta 325
|||||||||||||||||||||||||
Sbjct: 365 tgaatctacaagttactttgttcta 389
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribosomal protein
S29, rat, PIR:S30298
Length = 400
Score = 192 bits (97), Expect = 1e-48
Identities = 151/169 (89%)
Strand = Plus / Plus
Query: 20 atgggtcactccaacgtctggaattctcatcctaagaaatacggtcctggttctcgctta 79
||||||||||| || |||||||| |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 77 atgggtcactctaatgtctggaactctcatccgaagaagtacggtcctggatctcgttta 136
Query: 80 tgccgtgtgtgtggaaactcccatgggctaatcaggaagtatggtctcaactgctgcaga 139
||||||||||| || ||||| || ||||| ||||||||||||||| | || |||||||||
Sbjct: 137 tgccgtgtgtgcgggaactcacacgggcttatcaggaagtatggtttgaattgctgcaga 196
Query: 140 cagtgtttccgtagcaacgccaaggaaatcggattcattaagtaccgtt 188
||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 197 cagtgtttccgcagtaacgccaaggagatcggattcattaagtaccgtt 245
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribosomal protein
S29, rat, PIR:S30298
Length = 483
Score = 176 bits (89), Expect = 8e-44
Identities = 149/169 (88%)
Strand = Plus / Plus
Query: 20 atgggtcactccaacgtctggaattctcatcctaagaaatacggtcctggttctcgctta 79
||||||||||| || || ||||| |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 69 atgggtcactctaatgtatggaactctcatccgaagaagtacggtcctggatctcgttta 128
Query: 80 tgccgtgtgtgtggaaactcccatgggctaatcaggaagtatggtctcaactgctgcaga 139
||||||||||| || ||||| || || || ||| ||||||||||| | ||||||||||||
Sbjct: 129 tgccgtgtgtgcgggaactcgcacggtctgatccggaagtatggtttgaactgctgcaga 188
Query: 140 cagtgtttccgtagcaacgccaaggaaatcggattcattaagtaccgtt 188
|||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 189 cagtgtttccgtagcaacgctaaggagattggattcattaagtaccgtt 237
>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan endohydrolase
isoenzyme X-I, Hordeum vulgare,PID:g1813595
Length = 1978
Score = 36.2 bits (18), Expect = 0.18
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 85 tgtgtgtggaaactcccatggg 106
|||||| |||||||||||||||
Sbjct: 1864 tgtgtgaggaaactcccatggg 1885
>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) family protein
similar to RING-H2 zinc finger protein ATL6 [Arabidopsis
thaliana] gi|4928403|gb|AAD33584.1|AF132016_1[4928403];
contains Pfam domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1490
Score = 34.2 bits (17), Expect = 0.71
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 318 ttgttctaaaaaaaaaaaaaa 338
||||||| |||||||||||||
Sbjct: 1337 ttgttcttaaaaaaaaaaaaa 1357
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,928
Number of Sequences: 29161
Number of extensions: 17928
Number of successful extensions: 3580
Number of sequences better than 10.0: 38
length of query: 338
length of database: 44,058,232
effective HSP length: 17
effective length of query: 321
effective length of database: 43,562,495
effective search space: 13983560895
effective search space used: 13983560895
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)