BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z47383.r
         (308 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48070.1  68416.m05241 expressed protein                       595   e-170
At5g10060.1  68418.m01165 expressed protein                        42   0.003
At4g21720.1  68417.m03145 expressed protein                        42   0.003
At4g08320.1  68417.m01373 tetratricopeptide repeat (TPR)-con...    42   0.003
At2g31590.1  68415.m03859 hypothetical protein                     42   0.003

>At3g48070.1 68416.m05241 expressed protein
          Length = 1559

 Score =  595 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaccaaacttgactgtctatatgctgtatttagtcgctcaacatagaatcaagtagaatg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 aaccaaacttgactgtctatatgctgtatttagtcgctcaacatagaatcaagtagaatg 1500

                                                                        
Query: 61   atataacatctatggccaccttaaaataacagacgacataaaatgatacctttagagtat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 atataacatctatggccaccttaaaataacagacgacataaaatgatacctttagagtat 1440

                                                                        
Query: 121  tacagataagcaaggttctcgcaggctatgagaaagagacttattgcaacttttatgtat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 tacagataagcaaggttctcgcaggctatgagaaagagacttattgcaacttttatgtat 1380

                                                                        
Query: 181  ttgaaattcgtgtaccaccttatgtactcacacaccactctacataaccaccaccaccac 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 ttgaaattcgtgtaccaccttatgtactcacacaccactctacataaccaccaccaccac 1320

                                                                        
Query: 241  caccacatgtttcagatgaagaagagtcattgacatcgaagaacatagaacattgttctc 300
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1319 caccacatgtttcagatgaagaagagtcattgacatagaagaacatagaacatagttctc 1260

                    
Query: 301  agttgcca 308
            ||||||||
Sbjct: 1259 agttgcca 1252



>At5g10060.1 68418.m01165 expressed protein
          Length = 1985

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 228  ccaccaccaccaccaccacat 248
            |||||||||||||||||||||
Sbjct: 1603 ccaccaccaccaccaccacat 1623




 Score = 34.2 bits (17), Expect = 0.65
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 227  accaccaccaccaccac 243
            |||||||||||||||||
Sbjct: 1605 accaccaccaccaccac 1621



>At4g21720.1 68417.m03145 expressed protein 
          Length = 420

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 226 aaccaccaccaccaccaccac 246
           |||||||||||||||||||||
Sbjct: 344 aaccaccaccaccaccaccac 364



>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing protein
           glutamine-rich tetratricopeptide repeat (TPR) containing
           protein (SGT) - Rattus norvegicus,PID:e1285298
           (SP|O70593); contains Pfam profile PF00515 TPR Domain
          Length = 1845

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 227 accaccaccaccaccaccacatgtt 251
           |||||||||||||||||||| ||||
Sbjct: 275 accaccaccaccaccaccacctgtt 299



>At2g31590.1 68415.m03859 hypothetical protein 
          Length = 723

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 226 aaccaccaccaccaccaccac 246
           |||||||||||||||||||||
Sbjct: 697 aaccaccaccaccaccaccac 677




 Score = 36.2 bits (18), Expect = 0.16
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 227 accaccaccaccaccacc 244
           ||||||||||||||||||
Sbjct: 693 accaccaccaccaccacc 676



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,681
Number of Sequences: 29161
Number of extensions: 15681
Number of successful extensions: 2864
Number of sequences better than 10.0: 217
length of query: 308
length of database: 44,058,232
effective HSP length: 16
effective length of query: 292
effective length of database: 43,591,656
effective search space: 12728763552
effective search space used: 12728763552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)