BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z46687.r
(296 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27990.1 68414.m03428 expressed protein 533 e-151
At1g69220.2 68414.m07926 serine/threonine protein kinase, p... 34 0.62
At1g69220.1 68414.m07925 serine/threonine protein kinase, p... 34 0.62
At5g17400.1 68418.m02041 ADP, ATP carrier protein, mitochon... 32 2.5
At4g39320.1 68417.m05567 microtubule-associated protein-rel... 32 2.5
>At1g27990.1 68414.m03428 expressed protein
Length = 816
Score = 533 bits (269), Expect = e-151
Identities = 291/297 (97%), Gaps = 1/297 (0%)
Strand = Plus / Plus
Query: 1 gaaccgacgtggacaaaacggcgtcatccagtgagaagggacggtggtcggtgatgacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 32 gaaccgacgtggacaaaacggcgtcatccagtgagaagggacggtggtcggggatgacgg 91
Query: 61 cgataggaggtggcagtggaggtttgatggtgtcgttaagggttatagagctacagctag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 92 cgataggaggtggcagtggaggtttgatggggtcgttaagggttatagagctacagctag 151
Query: 121 tcgcgttcatactagttttctcagcaagcggtctcgtaccaatacttgacatgctttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tcgcgttcatactagttttctcagcaagcggtctcgtaccaatacttgacatgctttttc 211
Query: 181 cagcgtttgcgtctatctatataatcgccctctcgcgtttagctttcccttctcacggtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 212 cagcgtttgcgtctatctatataatcgccctctcgcgtttagctttcccttctcacggcg 271
Query: 241 tttcca-cgcttcccccgaagtcttccgcggcagcaaactcttcaagttgttcgtga 296
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 272 tttccaccgcttcccccgaagtcttccgcggcagcaaactcttcaggttgtacgtga 328
>At1g69220.2 68414.m07926 serine/threonine protein kinase, putative identical to
serine/threonine kinase [Arabidopsis thaliana]
gi|2352084|gb|AAB68776
Length = 2592
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4 ccgacgtggacaaaacg 20
|||||||||||||||||
Sbjct: 2278 ccgacgtggacaaaacg 2294
>At1g69220.1 68414.m07925 serine/threonine protein kinase, putative identical to
serine/threonine kinase [Arabidopsis thaliana]
gi|2352084|gb|AAB68776
Length = 2748
Score = 34.2 bits (17), Expect = 0.62
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4 ccgacgtggacaaaacg 20
|||||||||||||||||
Sbjct: 2359 ccgacgtggacaaaacg 2375
>At5g17400.1 68418.m02041 ADP, ATP carrier protein, mitochondrial, putative /
ADP/ATP translocase, putative / adenine nucleotide
translocator, putative similar to SWISS-PROT:Q09188
ADP,ATP carrier protein (ADP/ATP translocase)
[Schizosaccharomyces pombe]; contains Pfam profile:
PF00153 mitochondrial carrier protein
Length = 1294
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 ggtttgatggtgtcgt 96
||||||||||||||||
Sbjct: 760 ggtttgatggtgtcgt 745
>At4g39320.1 68417.m05567 microtubule-associated protein-related contains weak
similarity to microtubule-associated protein 1B (MAP 1B)
(Swiss-Prot:P46821) [Homo sapiens]
Length = 703
Score = 32.2 bits (16), Expect = 2.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 181 cagcgtttgcgtctatctat 200
|||||||||||| |||||||
Sbjct: 667 cagcgtttgcgtttatctat 648
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5802
Number of Sequences: 29161
Number of extensions: 5802
Number of successful extensions: 438
Number of sequences better than 10.0: 30
length of query: 296
length of database: 44,058,232
effective HSP length: 16
effective length of query: 280
effective length of database: 43,591,656
effective search space: 12205663680
effective search space used: 12205663680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)