BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z46679.r
         (279 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64200.1  68418.m08062 arginine/serine-rich splicing fact...   406   e-113
At5g43380.2  68418.m05303 serine/threonine protein phosphata...    36   0.15 
At5g43380.1  68418.m05302 serine/threonine protein phosphata...    36   0.15 
At5g48620.1  68418.m06013 disease resistance protein (CC-NBS...    34   0.58 
At5g22570.1  68418.m02636 WRKY family transcription factor c...    32   2.3  

>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains
            similarity to splicing factor; contains Pfam profile
            PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
            domain)
          Length = 2084

 Score =  406 bits (205), Expect = e-113
 Identities = 253/265 (95%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagtgaaactcaactgaactttgatttctcaacttaagattgaaaactcaacgaaccagc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 aagtgaaactcaactgaactttgatttctcaacttaagattgaaaactcaacgaaccagc 1288

                                                                        
Query: 61   ccttcttagcattagcgacacaaggatgatactagttaaagcagatagctgtgaccagca 120
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 ccttctaagcattagcgacacaaggatgatactagttaaagcagatagctgtgaccagca 1228

                                                                        
Query: 121  tcgatcatcttcggtttcataaacagcatcgatcatcttcagtttcataaacagccatca 180
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1227 tcgatcatctacggtttcataaacagcatcgatcatctacagtttcataaacagccatca 1168

                                                                        
Query: 181  acagctacaatctcaacatgttaagtg-cagcttcccagtcaattctttttctcgaacca 239
            |||||||||||||||||||| |  ||| || ||||||||||||||| |||||||||||||
Sbjct: 1167 acagctacaatctcaacatggt-tgtgccatcttcccagtcaattc-ttttctcgaacca 1110

                                     
Query: 240  gaggtaagcaagttattctacagag 264
            |||| |||||||| || ||||||||
Sbjct: 1109 gaggaaagcaagtaatactacagag 1085



>At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP1 isozyme 7
            (TOPP7) identical to SP|O82733 Serine/threonine protein
            phosphatase PP1 isozyme 7 (EC 3.1.3.16) {Arabidopsis
            thaliana}
          Length = 1199

 Score = 36.2 bits (18), Expect = 0.15
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   aactgaactttgatttct 29
            ||||||||||||||||||
Sbjct: 1063 aactgaactttgatttct 1046



>At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP1 isozyme 7
            (TOPP7) identical to SP|O82733 Serine/threonine protein
            phosphatase PP1 isozyme 7 (EC 3.1.3.16) {Arabidopsis
            thaliana}
          Length = 1400

 Score = 36.2 bits (18), Expect = 0.15
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   aactgaactttgatttct 29
            ||||||||||||||||||
Sbjct: 1063 aactgaactttgatttct 1046



>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR class), putative
            domain signature CC-NBS-LRR exists, suggestive of a
            disease resistance protein.
          Length = 3381

 Score = 34.2 bits (17), Expect = 0.58
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 115  ccagcatcgatcatctt 131
            |||||||||||||||||
Sbjct: 2964 ccagcatcgatcatctt 2980




 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 144  cagcatcgatcatctt 159
            ||||||||||||||||
Sbjct: 2965 cagcatcgatcatctt 2980



>At5g22570.1 68418.m02636 WRKY family transcription factor contains Pfam
           profile: PF03106 WRKY DNA -binding domain
          Length = 1016

 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 123 gatcatcttcggtttc 138
           ||||||||||||||||
Sbjct: 279 gatcatcttcggtttc 264



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9142
Number of Sequences: 29161
Number of extensions: 9142
Number of successful extensions: 707
Number of sequences better than 10.0: 54
length of query: 279
length of database: 44,058,232
effective HSP length: 16
effective length of query: 263
effective length of database: 43,591,656
effective search space: 11464605528
effective search space used: 11464605528
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)