BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227053_RAFL14_76_B11.r
(474 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34010.1 68414.m04217 expressed protein 839 0.0
At4g36520.1 68417.m05185 trichohyalin-related low similarit... 42 0.004
At5g53800.1 68418.m06685 expressed protein 36 0.26
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2)... 36 0.26
At4g18290.1 68417.m02714 inward rectifying potassium channe... 36 0.26
>At1g34010.1 68414.m04217 expressed protein
Length = 982
Score = 839 bits (423), Expect = 0.0
Identities = 466/475 (98%), Gaps = 4/475 (0%)
Strand = Plus / Minus
Query: 1 ccaaaagttgtggtgtggattttatcattacaggacagagtagcatagagatgtaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ccaaaagttgtggtgtggattttatcattacaggacagagtagcatagagatgtaataca 923
Query: 61 aagaataatctaaaatacagcacaaaattgacaaatcaagtggctacaaaagtacacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 aagaataatctaaaatacagcacaaaattgacaaatcaagtggctacaaaagtacacatc 863
Query: 121 caaaagttcctcttcttcttatccaatcttttgcaaatccttctccctctctctttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 caaaagttcctcttcttcttatccaatcttttgcaaatccttctccctctctctttctat 803
Query: 181 atataataacaaaggtgcacatgataagagagcagctacatcaactatatgaaaagccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atataataacaaaggtgcacatgataagagagcagctacatcaactatatgaaaagccct 743
Query: 241 ttgtctggaaacaatttttaacttccaagtgggtcacatgattgtgcacatacagctttt 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 742 ttgtctgcaaacaatttttaacttccaa-tgggtcacatgattgtgcacatacagctttt 684
Query: 301 tccacttccatgatgaaactcatcttctgattcatcaaccttcactaggctcaaattctc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 683 tccacttccatgatgaaactcatcttctgattcatcaa-cttcactaggctcaaattctc 625
Query: 361 tgacctcagcaactctcaataccacatgtatcagggcagtggactttccttctatctata 420
|||||||||||| |||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 624 tgacctcagcaa-tctcaataccacatgtatcaggccactgcactttccttctatctata 566
Query: 421 tgat-caccacaccatctctactcacatcatcatcaccaatcacaagatcactaa 474
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 tgatccaccacaccatctctactcacatcatcatcaccaatcacaacatcactaa 511
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to SP|Q07283
Trichohyalin {Homo sapiens}
Length = 4203
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 atccttctccctctctctttc 177
|||||||||||||||||||||
Sbjct: 3495 atccttctccctctctctttc 3475
>At5g53800.1 68418.m06685 expressed protein
Length = 1277
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 126 gttcctcttcttcttatc 143
||||||||||||||||||
Sbjct: 525 gttcctcttcttcttatc 508
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3) identical to
potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 3169
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 161 ttctccctctctctttct 178
||||||||||||||||||
Sbjct: 550 ttctccctctctctttct 567
>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2) identical to
inward rectifying K+ channel [Arabidopsis thaliana]
gi|12666980|emb|CAC28122; Shaker-type channel (1P/6TM),
PMID:11500563
Length = 2216
Score = 36.2 bits (18), Expect = 0.26
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 430 caccatctctactcacatcatcatca 455
||||||||||| ||||||| ||||||
Sbjct: 2059 caccatctctaatcacatcttcatca 2034
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,944
Number of Sequences: 29161
Number of extensions: 24944
Number of successful extensions: 2527
Number of sequences better than 10.0: 80
length of query: 474
length of database: 44,058,232
effective HSP length: 17
effective length of query: 457
effective length of database: 43,562,495
effective search space: 19908060215
effective search space used: 19908060215
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)