BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227039_RAFL14_75_E04.r
(446 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36410.2 68415.m04470 expressed protein contains Pfam pr... 815 0.0
At2g36410.1 68415.m04469 expressed protein contains Pfam pr... 769 0.0
At3g52920.2 68416.m05833 expressed protein weak similarity ... 90 2e-17
At3g09980.1 68416.m01198 expressed protein contains Pfam pr... 66 3e-10
At3g52920.1 68416.m05832 expressed protein weak similarity ... 48 6e-05
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile PF04949: Family
of unknown function (DUF662)
Length = 1269
Score = 815 bits (411), Expect = 0.0
Identities = 439/447 (98%), Gaps = 1/447 (0%)
Strand = Plus / Minus
Query: 1 gccaacgagaagaaactttactaaaaagccaaaaaaaaataataaattcttcaaaagaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1179 gccaacgagaagaaactttactaaaaagccaaaaaaaaataataaattcttcaaaagaca 1120
Query: 61 gatacaaaacataatacagagaaagaaagaataatcactgtgatgagttt-agtatccta 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1119 gatacaaaacataatacagagaaagaaagaataatcactgtgatgagtttcagtatccta 1060
Query: 120 agaatctcccattttcccatatccctaaatttggttaatcaaaaataagagagaacccac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 agaatctcccattttcccatatccctaaatttggttaatcaaaaataagagagaacccac 1000
Query: 180 aaattttacaaatcaaacccccaaagactttaaaaaaactataacaataaaaaaaaaagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 aaattttacaaatcaaacccccaaagactttaaaaaaactataacaataaaaaaaaaagc 940
Query: 240 aacccacacatcttacatgatgaaaattttaaactaggtaggtagatcacacaaaagaac 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 939 aacccacacatcttacatgatgaaaattttaaactaggtaggtacatcacacaaaagaac 880
Query: 300 ccaattagttcttcttgaacaacctttttcacagggtttctatgctcttggtcagctcct 359
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 879 ccaattagttcttcttgaacaacctttttcacacggtttctatgctcttgctcagctcct 820
Query: 360 ccagtttaatcatcctcaaattctcgctttctccaaccaactccatgagtttggtgatca 419
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 819 ccagcttaatcatcctcaacttctcgctttctccaaccaactccatgagttttgtgatca 760
Query: 420 gctgtactttctccctgttcttctcgt 446
|||||||||||||||||||||||||||
Sbjct: 759 gctgtactttctccctgttcttctcgt 733
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile PF04949: Family
of unknown function (DUF662)
Length = 1194
Score = 769 bits (388), Expect = 0.0
Identities = 439/456 (96%), Gaps = 10/456 (2%)
Strand = Plus / Minus
Query: 1 gccaacgagaagaaactttactaaaaagccaaaaaaaaataataaattcttcaaaagaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1188 gccaacgagaagaaactttactaaaaagccaaaaaaaaataataaattcttcaaaagaca 1129
Query: 61 gatacaaaacataatacagagaaagaaagaataatcactgtgatgagttt-agtatccta 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1128 gatacaaaacataatacagagaaagaaagaataatcactgtgatgagtttcagtatccta 1069
Query: 120 agaatctcccattttcccatatccctaaatttggttaatcaaaaataagagagaacccac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 agaatctcccattttcccatatccctaaatttggttaatcaaaaataagagagaacccac 1009
Query: 180 aaattttacaaatcaaacccccaaagactttaaaaaaactataacaataaaaaaaaaagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aaattttacaaatcaaacccccaaagactttaaaaaaactataacaataaaaaaaaaagc 949
Query: 240 aacccacacatcttacatgatgaaaattttaaactaggtaggtagatcacacaaaagaac 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 948 aacccacacatcttacatgatgaaaattttaaactaggtaggtacatcacacaaaagaac 889
Query: 300 ccaattagttcttcttgaacaacctttttcacagggtttctatgctcttggtcagctcct 359
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 888 ccaattagttcttcttgaacaacctttttcacacggtttctatgctcttgctcagctcct 829
Query: 360 ccagtttaatcatcctcaaattctcgctttctccaaccaa---------ctccatgagtt 410
|||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 828 ccagcttaatcatcctcaacttctcgctttctccaaccaactgttccatctccatgagtt 769
Query: 411 tggtgatcagctgtactttctccctgttcttctcgt 446
| ||||||||||||||||||||||||||||||||||
Sbjct: 768 ttgtgatcagctgtactttctccctgttcttctcgt 733
>At3g52920.2 68416.m05833 expressed protein weak similarity to enterophilin-2L
[Cavia porcellus] GI:12718845; contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 1032
Score = 89.7 bits (45), Expect = 2e-17
Identities = 93/109 (85%)
Strand = Plus / Minus
Query: 338 tctatgctcttggtcagctcctccagtttaatcatcctcaaattctcgctttctccaacc 397
||||||||| || | ||||| ||||| || ||| ||||| ||||||||||||||||||
Sbjct: 703 tctatgctcctgcttagctcatccagcttcttcaacctcagcttctcgctttctccaacc 644
Query: 398 aactccatgagtttggtgatcagctgtactttctccctgttcttctcgt 446
|||||||| || |||||||||||||| |||||||| | ||||||||||
Sbjct: 643 aactccattagcttggtgatcagctgaactttctcacgattcttctcgt 595
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile PF04949:
Family of unknown function (DUF662)
Length = 926
Score = 65.9 bits (33), Expect = 3e-10
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 338 tctatgctcttggtcagctcctccagtttaatcatcctcaaattctcgctttctccaacc 397
|||||| ||||| | ||||| ||||| || |||| |||| || ||||||||||| |||
Sbjct: 651 tctatgttcttgcttagctcttccagcttcttcattctcatcttttcgctttctcccacc 592
Query: 398 aactccatgagtttggtgatcagctgtactttctccctgttcttctcgt 446
|||||||| || ||||||| ||||| || |||||||||||||| ||||
Sbjct: 591 aactccattagcctggtgattagctgcaccttctccctgttcttttcgt 543
>At3g52920.1 68416.m05832 expressed protein weak similarity to enterophilin-2L
[Cavia porcellus] GI:12718845; contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 1058
Score = 48.1 bits (24), Expect = 6e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 338 tctatgctcttggtcagctcctccagtttaatcatcctcaaattctcgctttctccaacc 397
||||||||| || | ||||| ||||| || ||| ||||| ||||||||||||||||||
Sbjct: 749 tctatgctcctgcttagctcatccagcttcttcaacctcagcttctcgctttctccaacc 690
Query: 398 aact 401
||||
Sbjct: 689 aact 686
Score = 46.1 bits (23), Expect = 3e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 400 ctccatgagtttggtgatcagctgtactttctccctgttcttctcgt 446
|||||| || |||||||||||||| |||||||| | ||||||||||
Sbjct: 678 ctccattagcttggtgatcagctgaactttctcacgattcttctcgt 632
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,357
Number of Sequences: 29161
Number of extensions: 22357
Number of successful extensions: 1898
Number of sequences better than 10.0: 63
length of query: 446
length of database: 44,058,232
effective HSP length: 17
effective length of query: 429
effective length of database: 43,562,495
effective search space: 18688310355
effective search space used: 18688310355
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)