BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227034_RAFL14_75_A13.r
(448 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68795.1 68414.m07864 CLE12 CLAVATA3/ESR-Related 12 864 0.0
At5g19810.1 68418.m02354 proline-rich extensin-like family ... 42 0.004
At4g20940.1 68417.m03034 leucine-rich repeat family protein... 40 0.015
At1g70550.2 68414.m08120 expressed protein similar to hypot... 38 0.061
At1g70550.1 68414.m08119 expressed protein similar to hypot... 38 0.061
>At1g68795.1 68414.m07864 CLE12 CLAVATA3/ESR-Related 12
Length = 798
Score = 864 bits (436), Expect = 0.0
Identities = 446/448 (99%), Gaps = 1/448 (0%)
Strand = Plus / Plus
Query: 1 gataaagcatcttgcgttgaaaagacaaaatccaactctctcgcatctcttgagctttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gataaagcatcttgcgttgaaaagacaaaatccaactctctcgcatctcttgagctttac 60
Query: 61 attttgtcaactatatcatatataaatatagatgagtcctttcatactctcttctaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attttgtcaactatatcatatataaatatagatgagtcctttcatactctcttctaaacc 120
Query: 121 gtccaacaaaacctttttagtcttttttccaaaaacatacaaaacataaaaaaaaaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtccaacaaaacctttttagtcttttttccaaaaacatacaaaacataaaaaaaaaacaa 180
Query: 181 gaatttagtttggtggcctattgattagcacacccatatgcttagaatttcttcatcatc 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatttagttttgtggcctattgattagcacacccatatgcttagaatttcttcatcatc 240
Query: 241 ttccatggccttgaaattttctcaaattctcttcatagttttatggctatctctcttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttccatggccttgaaattttctcaaattctcttcatagttttatggctatctctcttctt 300
Query: 301 tctcctcctccaccacttgtactccctcaacttccgtcgtctctactctctaaacgcggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcctcctccaccacttgtactccctcaacttccgtcgtctctactctctaaacgcggt 360
Query: 361 ggagccatcattgttgaagcaacactaccgtagctatagattagtgagcagaaaagttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggagccatcattgttgaagcaacactaccgtagctatagattagtgagcagaaaagttct 420
Query: 421 ctccgacagattcgaccttcacaccttt 448
||||||||||||||| ||||||||||||
Sbjct: 421 ctccgacagattcga-cttcacaccttt 447
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 750
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 294 tcttctttctcctcctccacc 314
|||||||||||||||||||||
Sbjct: 444 tcttctttctcctcctccacc 464
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 297 tctttctcctcctccaccac 316
||||||||||||||||||||
Sbjct: 339 tctttctcctcctccaccac 358
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 297 tctttctcctcctccacc 314
||||||||||||||||||
Sbjct: 204 tctttctcctcctccacc 221
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 294 tcttctttctcctcctcc 311
||||||||||||||||||
Sbjct: 282 tcttctttctcctcctcc 299
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 297 tctttctcctcctccacc 314
||||||||||||||||||
Sbjct: 312 tctttctcctcctccacc 329
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 294 tcttctttctcctcctcc 311
||||||||||||||||||
Sbjct: 363 tcttctttctcctcctcc 380
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 294 tcttctttctcctcctcc 311
||||||||||||||||||
Sbjct: 390 tcttctttctcctcctcc 407
Score = 34.2 bits (17), Expect = 0.96
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 294 tcttctttctcctcctccacc 314
|||| ||||||||||||||||
Sbjct: 471 tcttttttctcctcctccacc 491
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 301 tctcctcctccaccac 316
||||||||||||||||
Sbjct: 181 tctcctcctccaccac 196
>At4g20940.1 68417.m03034 leucine-rich repeat family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 3176
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 tacaaaacataaaaaaaaaa 177
||||||||||||||||||||
Sbjct: 2967 tacaaaacataaaaaaaaaa 2948
>At1g70550.2 68414.m08120 expressed protein similar to hypothetical protein
GB:AAD31338 [Arabidopsis thaliana] and to putative
putative carboxyl-terminal peptidase GB:AAC16072
[Arabidopsis thaliana] contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 1754
Score = 38.2 bits (19), Expect = 0.061
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 292 tctcttctttctcctcctccaccactt 318
||||||||| || ||||||||||||||
Sbjct: 237 tctcttcttccttctcctccaccactt 263
>At1g70550.1 68414.m08119 expressed protein similar to hypothetical protein
GB:AAD31338 [Arabidopsis thaliana] and to putative
putative carboxyl-terminal peptidase GB:AAC16072
[Arabidopsis thaliana] contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 1926
Score = 38.2 bits (19), Expect = 0.061
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 292 tctcttctttctcctcctccaccactt 318
||||||||| || ||||||||||||||
Sbjct: 409 tctcttcttccttctcctccaccactt 435
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,497
Number of Sequences: 29161
Number of extensions: 25497
Number of successful extensions: 2794
Number of sequences better than 10.0: 116
length of query: 448
length of database: 44,058,232
effective HSP length: 17
effective length of query: 431
effective length of database: 43,562,495
effective search space: 18775435345
effective search space used: 18775435345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)