BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227019_RAFL14_74_C24.r
(432 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22950.1 68416.m02893 ADP-ribosylation factor, putative ... 773 0.0
At3g22942.1 68416.m02891 heterotrimeric G protein protein g... 773 0.0
At2g25140.1 68415.m03007 heat shock protein 100, putative /... 38 0.059
At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finge... 36 0.23
At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (C... 36 0.23
>At3g22950.1 68416.m02893 ADP-ribosylation factor, putative similar to
ADP-ribosylation factor GB:P91924 [Dugesia japonica]
Length = 1326
Score = 773 bits (390), Expect = 0.0
Identities = 427/434 (98%), Gaps = 4/434 (0%)
Strand = Plus / Plus
Query: 1 ggaagaaaaaaatcttgttttgtttcagatttaaaactaccaccaaactcaaaatccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ggaagaaaaaaatcttgttttgtttcagatttaaaactaccaccaaactcaaaatccaaa 954
Query: 61 cgaactaaaaacaaaaacagagcaagcattaaaacaagacaagacaccattgtagcctct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 955 cgaactaaaaacaaaaacagagcaaccattaaaacaagacaagacaccattgtagcctct 1014
Query: 121 ctcagagctcaccacagtctgcgataaccaccggccttggaaggaatcctgttcaaagtt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1015 ctcagagctcaccacagtctgcgataaccaccggc-ttggaaggaatcctgttcaaagtt 1073
Query: 181 c-aacctcgtcttcaatgctcctgagcacgtcgagtc-ttcaaaaacttgcccgaacacg 238
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1074 ccaacctcgtcttcaatgctcctgagcacgtcgagtccttcaacaacttgcccgaacacg 1133
Query: 239 acatgtaaaccatcgagaaacgagaacttttccaagacaatctggaactgagatgcattg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 acatgtaaaccatcgagaaacgagaacttttccaagacaatctggaactgagatgcattg 1193
Query: 299 gtgtggggatcaccgacggccactgtgctagattttcttgtggtggcgtgaatttggcac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 gtgtggggatcaccgacggccactgtgctagattttcttgtggtggcgtgaatttggcac 1253
Query: 359 tgtggtcttcttaaattaagagacacatcaagatcaactagattttttactggacaaatg 418
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 1254 tgtggtcttcttaaattaagagacacatcaagatcaa-tagattttttactgcacaaatg 1312
Query: 419 aatcaatttttttt 432
||||||||||||||
Sbjct: 1313 aatcaatttttttt 1326
>At3g22942.1 68416.m02891 heterotrimeric G protein protein gamma subunit (AGG2)
described in Biochim Biophys Acta. 2001 Aug
30;1520(2):147-53.
Length = 1779
Score = 773 bits (390), Expect = 0.0
Identities = 427/434 (98%), Gaps = 4/434 (0%)
Strand = Plus / Minus
Query: 1 ggaagaaaaaaatcttgttttgtttcagatttaaaactaccaccaaactcaaaatccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 ggaagaaaaaaatcttgttttgtttcagatttaaaactaccaccaaactcaaaatccaaa 1064
Query: 61 cgaactaaaaacaaaaacagagcaagcattaaaacaagacaagacaccattgtagcctct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1063 cgaactaaaaacaaaaacagagcaaccattaaaacaagacaagacaccattgtagcctct 1004
Query: 121 ctcagagctcaccacagtctgcgataaccaccggccttggaaggaatcctgttcaaagtt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1003 ctcagagctcaccacagtctgcgataaccaccggc-ttggaaggaatcctgttcaaagtt 945
Query: 181 c-aacctcgtcttcaatgctcctgagcacgtcgagtc-ttcaaaaacttgcccgaacacg 238
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 944 ccaacctcgtcttcaatgctcctgagcacgtcgagtccttcaacaacttgcccgaacacg 885
Query: 239 acatgtaaaccatcgagaaacgagaacttttccaagacaatctggaactgagatgcattg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 acatgtaaaccatcgagaaacgagaacttttccaagacaatctggaactgagatgcattg 825
Query: 299 gtgtggggatcaccgacggccactgtgctagattttcttgtggtggcgtgaatttggcac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gtgtggggatcaccgacggccactgtgctagattttcttgtggtggcgtgaatttggcac 765
Query: 359 tgtggtcttcttaaattaagagacacatcaagatcaactagattttttactggacaaatg 418
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 764 tgtggtcttcttaaattaagagacacatcaagatcaa-tagattttttactgcacaaatg 706
Query: 419 aatcaatttttttt 432
||||||||||||||
Sbjct: 705 aatcaatttttttt 692
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100, putative /
heat shock protein clpB, putative / HSP100/ClpB, putative
similar to HSP100/ClpB GI:9651530 [Phaseolus lunatus]
Length = 3223
Score = 38.2 bits (19), Expect = 0.059
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 283 gaactgagatgcattggtg 301
|||||||||||||||||||
Sbjct: 1316 gaactgagatgcattggtg 1334
>At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger) family protein
contains a TG non-consensus donor splice site at exon
2; contains Pfam profile PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 932
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 66 taaaaacaaaaacagagc 83
||||||||||||||||||
Sbjct: 69 taaaaacaaaaacagagc 52
>At1g13090.1 68414.m01518 cytochrome P450 71B28, putative (CYP71B28) Identical
to Cytochrome P450 (SP:Q9SAE3) [Arabidopsis thaliana];
strong similarity to gb|X97864 cytochrome P450 from
Arabidopsis thaliana and is a member of the PF|00067
Cytochrome P450 family. ESTs gb|N65665, gb|T14112,
gb|T76255, gb|T20906 and gb|AI100027 come from this
gene
Length = 1656
Score = 36.2 bits (18), Expect = 0.23
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 62 gaactaaaaacaaaaacagagc 83
|||| |||||||||||||||||
Sbjct: 11 gaacaaaaaacaaaaacagagc 32
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,744
Number of Sequences: 29161
Number of extensions: 16744
Number of successful extensions: 1361
Number of sequences better than 10.0: 42
length of query: 432
length of database: 44,058,232
effective HSP length: 17
effective length of query: 415
effective length of database: 43,562,495
effective search space: 18078435425
effective search space used: 18078435425
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)