BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226977_RAFL14_72_C13.r
(490 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37650.1 68415.m04618 scarecrow-like transcription facto... 811 0.0
At5g13220.3 68418.m01518 expressed protein 38 0.067
At5g13220.2 68418.m01517 expressed protein 38 0.067
At4g32750.1 68417.m04660 expressed protein 36 0.27
At4g11570.2 68417.m01855 haloacid dehalogenase-like hydrola... 36 0.27
>At2g37650.1 68415.m04618 scarecrow-like transcription factor 9 (SCL9) identical
to cDNA scarecrow-like 9 (SCL9) mRNA, partial cds
GI:4580524
Length = 2522
Score = 811 bits (409), Expect = 0.0
Identities = 451/457 (98%), Gaps = 6/457 (1%)
Strand = Plus / Minus
Query: 1 agtaaaacatcttatttcaatgcaacattggttctcgtgtgtacattggagaaggaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 agtaaaacatcttatttcaatgcaacattggttctcgtgtgtacattggagaaggaaaaa 2463
Query: 61 acttctctttaaaccatagtttctctaagcttcctcttatatgtgttacaatctagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 acttctctttaaaccatagtttctctaagcttcctcttatatgtgttacaatctagacaa 2403
Query: 121 actaactctgctagcaatatacaaacaatctgatcaccctagcctacaagaataccgtta 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2402 actaactctgctagcaatatacaaacaatctgatcaccctag-ctacaagaataccgtta 2344
Query: 181 ggagaatctagctgagaaacaacaaaaacacagctagaaagttataaaacaggaccttac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2343 ggagaatctagctgagaaacaacaaaaacacagctagaaagttataaaacagga-cttac 2285
Query: 241 atcaagtattatctttgaacaagttctttgtgcagcattctcttcttacatctgtaattc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 atcaa-tattatctttgaacaagttctttgtgcagcattctcttcttacatctgtaattc 2226
Query: 301 tgtctctgggaattacacgaggaagaaaatcaagagatggtctctcatatgccaacgagg 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 tgtctctgggaattacac-aggaagaaaatcaagagatggtctctcatatgccaacgagg 2167
Query: 361 atttctcggctcaagccttggactctggtttccaaacagaaagagccatgacagttcttc 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 atttctcgg-tcaagccttggactctggtttccaaacagaaagagccatgacagttcttc 2108
Query: 421 ccttccagcccttgcaagagccaccggttatcttgat 457
|||||||| ||||||||||||||||||||||||||||
Sbjct: 2107 ccttccag-ccttgcaagagccaccggttatcttgat 2072
>At5g13220.3 68418.m01518 expressed protein
Length = 996
Score = 38.2 bits (19), Expect = 0.067
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 467 aattatttgggggtaaaaa 485
|||||||||||||||||||
Sbjct: 683 aattatttgggggtaaaaa 665
>At5g13220.2 68418.m01517 expressed protein
Length = 1346
Score = 38.2 bits (19), Expect = 0.067
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 467 aattatttgggggtaaaaa 485
|||||||||||||||||||
Sbjct: 683 aattatttgggggtaaaaa 665
>At4g32750.1 68417.m04660 expressed protein
Length = 1461
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 361 atttctcggctcaagcct 378
||||||||||||||||||
Sbjct: 671 atttctcggctcaagcct 688
>At4g11570.2 68417.m01855 haloacid dehalogenase-like hydrolase family protein
similar to genetic modifier [Zea mays] GI:10444400;
contains InterPro accession IPR005834: Haloacid
dehalogenase-like hydrolase
Length = 1747
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 310 gaattacacgaggaagaa 327
||||||||||||||||||
Sbjct: 1592 gaattacacgaggaagaa 1575
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,806
Number of Sequences: 29161
Number of extensions: 17806
Number of successful extensions: 1408
Number of sequences better than 10.0: 32
length of query: 490
length of database: 44,058,232
effective HSP length: 17
effective length of query: 473
effective length of database: 43,562,495
effective search space: 20605060135
effective search space used: 20605060135
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)