BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226967_RAFL14_71_I18.r
(470 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63595.1 68418.m07984 flavonol synthase, putative simila... 868 0.0
At5g63580.1 68418.m07981 flavonol synthase, putative simila... 50 2e-05
At5g43935.1 68418.m05375 flavonol synthase, putative simila... 46 3e-04
At5g08640.1 68418.m01027 flavonol synthase 1 (FLS1) identic... 40 0.016
At5g39865.1 68418.m04835 glutaredoxin family protein 36 0.25
>At5g63595.1 68418.m07984 flavonol synthase, putative similar to SP|Q96330
Flavonol synthase 1 (EC 1.14.11.-) (FLS1) from
Arabidopsis thaliana
Length = 1009
Score = 868 bits (438), Expect = 0.0
Identities = 465/470 (98%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 2 gtcaaattttttttgtttgaacttcaattaatagaaaccggttacaacaatgccaaacgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gtcaaattttttttgtttgaacttcaattaatagaaaccggttacaacaatgccaaacgg 950
Query: 62 ccaaatgaaacagagcaacaacaaacaacatacatacaacgacaaagaagtcaacttctt 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 949 ccaaatgaaacagagcaacaacaaacaacatacatacaacgacaaagaagtcaa-ttctt 891
Query: 122 gatcagtcgagaaagcttggggacttcaatgtctatgtaatcctggtaagttaaaggctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gatcagtcgagaaagcttggggacttcaatgtctatgtaatcctggtaagttaaaggctc 831
Query: 182 gaacttgggaggattatcgccggtggtgagttcgggaaatggctcacaaccatataataa 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 830 gaacttgggaggattatcgccgctggtgagttcgggaaatggctcacaaccatatcataa 771
Query: 242 ggaggcttgatatgaaccaccgacgacatcctcgttttctttttatccatcaaggctcta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ggaggcttgatatgaaccaccgacgacatcctcgttttctttttatccatcaaggctcta 711
Query: 302 tgcaacacattgttgtaccttccgttgctcatcttcatgatctgatctccgatgatgata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgcaacacattgttgtaccttccgttgctcatcttcatgatctgatctccgatgatgata 651
Query: 362 ataaccgcgggatatatataatctacatcgagcccagcggtcttccttgaacacttgaag 421
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 650 ataaccgcgggatatatataatctacatcgag-ccagcggtcttccttgaacacttgaag 592
Query: 422 t-cgaaaatttcattgggaatgagaagtgtgagtccattgaaatcagtgt 470
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tccgaaaatttcattgggaatgagaagtgtgagtccattgaaatcagtgt 542
>At5g63580.1 68418.m07981 flavonol synthase, putative similar to SP|Q96330;
contains PF03171 2OG-Fe(II) oxygenase superfamily
Length = 1137
Score = 50.1 bits (25), Expect = 2e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 296 gctctatgcaacacattgttgtaccttccgttgctca 332
||||||||||||||||| |||||| |||| |||||||
Sbjct: 756 gctctatgcaacacattcttgtactttccattgctca 720
>At5g43935.1 68418.m05375 flavonol synthase, putative similar to flavonol
synthase from Arabidopsis thaliana [SP|Q96330],
Matthiola incana [SP|O04395]; contains Pfam profile
PF03171 2OG-Fe(II) oxygenase superfamily
Length = 882
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 314 ttgtaccttccgttgctcatcttcatgatctgatc 348
|||||| | |||||||||||| |||||||||||||
Sbjct: 689 ttgtacttcccgttgctcatcctcatgatctgatc 655
Score = 40.1 bits (20), Expect = 0.016
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 169 aagttaaaggctcgaacttgggaggatt 196
||||||||| ||| ||||||||||||||
Sbjct: 835 aagttaaagactcaaacttgggaggatt 808
>At5g08640.1 68418.m01027 flavonol synthase 1 (FLS1) identical to SP|Q96330;
contains PF03171 2OG-Fe(II) oxygenase superfamily
Length = 1334
Score = 40.1 bits (20), Expect = 0.016
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 264 acgacatcctcgttttctttttatccatcaaggctctatgcaacacattgttgtaccttc 323
||||||||||||| |||| |||||||| | | |||||||||||||| || ||||| |
Sbjct: 919 acgacatcctcgtcttctctttatccaccgtcgtcctatgcaacacatttttatacctcc 860
Query: 324 cgttgctcatcttcatgatctgatctccgatg 355
| || |||| | ||| |||||||| ||||||
Sbjct: 859 cattactcaacctcagaatctgatcgccgatg 828
>At5g39865.1 68418.m04835 glutaredoxin family protein
Length = 1713
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 189 ggaggattatcgccggtg 206
||||||||||||||||||
Sbjct: 490 ggaggattatcgccggtg 507
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,203
Number of Sequences: 29161
Number of extensions: 18203
Number of successful extensions: 1548
Number of sequences better than 10.0: 38
length of query: 470
length of database: 44,058,232
effective HSP length: 17
effective length of query: 453
effective length of database: 43,562,495
effective search space: 19733810235
effective search space used: 19733810235
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)