BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226960_RAFL14_70_J06.r
(401 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67170.1 68414.m07641 expressed protein similar to enter... 684 0.0
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-a... 36 0.22
At5g56250.1 68418.m07019 expressed protein 36 0.22
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IP... 36 0.22
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IP... 36 0.22
>At1g67170.1 68414.m07641 expressed protein similar to enterophilin-2L
(GI:12718845) [Cavia porcellus]; similar to Hyaluronan
mediated motility receptor (Intracellular hyaluronic acid
binding protein) (Receptor for hyaluronan-mediated
motility) (CD168 antigen) (Swiss-Prot:O75330) [Homo
sapiens]
Length = 1523
Score = 684 bits (345), Expect = 0.0
Identities = 380/389 (97%), Gaps = 2/389 (0%)
Strand = Plus / Minus
Query: 1 catttgtaaactttttaactgagtgaaacatagagtcatagagacaaaatggtgaagggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 catttgtaaactttttaactgagtgaaacatagagtcatagagacaaaatggtgaagggc 1464
Query: 61 aaacaacaaatttctctttctttgttttttctttcccgatgttacatctctctgtatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 aaacaacaaatttctctttctttgttttttctttcccgatgttacatctctctgtatcac 1404
Query: 121 aaaacttgttgaaaaccgtctcacaaaagtcaagctctcaacaaaatcagttaaacaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 aaaacttgttgaaaaccgtctcacaaaagtcaagctctcaacaaaatcagttaaacaata 1344
Query: 181 gcactcaacgtccaccactggtaccaacttctctttacccataaagattatgggaccaaa 240
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 gcactcaacgttcaccact-gtaccaacttctctttacccataaagattatgggaccaaa 1285
Query: 241 caggcaacaattccaaagtggaaggaatctgtagctggtgagttatttatatatgtactc 300
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 caggcaacaattccacagttgaaggaatctgtagctggtgagttatttatatatgtactc 1225
Query: 301 ttagctggtggactcatctgggactagggtttccggggtgtaccggcgtaaggagtatgg 360
|||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
Sbjct: 1224 ttagctggtggactcatctgcgactagggtttcc-gtgtgtaccggcgtaaggagtattg 1166
Query: 361 ttagatggtccaggtgggaatggagcgcc 389
|||||||||||||||||||||||||||||
Sbjct: 1165 ttagatggtccaggtgggaatggagcgcc 1137
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to
SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha)
[Arabidopsis thaliana]
Length = 1761
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 206 aacttctctttacccata 223
||||||||||||||||||
Sbjct: 83 aacttctctttacccata 66
>At5g56250.1 68418.m07019 expressed protein
Length = 3146
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 78 ttctttgttttttctttc 95
||||||||||||||||||
Sbjct: 139 ttctttgttttttctttc 156
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP transferase 9
(IPT9) identical to tRNA isopentenyltransferase (IPT9)
[Arabidopsis thaliana] GI:14279070
Length = 1471
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 76 ctttctttgttttttctt 93
||||||||||||||||||
Sbjct: 898 ctttctttgttttttctt 915
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP transferase 9 (IPT9)
identical to tRNA isopentenyltransferase (IPT9)
[Arabidopsis thaliana] GI:14279070
Length = 1714
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 76 ctttctttgttttttctt 93
||||||||||||||||||
Sbjct: 997 ctttctttgttttttctt 1014
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,625
Number of Sequences: 29161
Number of extensions: 14625
Number of successful extensions: 1365
Number of sequences better than 10.0: 36
length of query: 401
length of database: 44,058,232
effective HSP length: 17
effective length of query: 384
effective length of database: 43,562,495
effective search space: 16727998080
effective search space used: 16727998080
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)