BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226880_RAFL14_63_C04.r
(445 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identi... 672 0.0
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / o... 36 0.24
At1g27780.1 68414.m03399 Ulp1 protease family protein simil... 34 0.95
At5g57380.1 68418.m07169 fibronectin type III domain-contai... 32 3.8
At5g49570.1 68418.m06135 transglutaminase-like family prote... 32 3.8
>At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identical to SP|O65359
Syntaxin 41 (AtSYP41) (AtTLG2a) {Arabidopsis thaliana}
Length = 1738
Score = 672 bits (339), Expect = 0.0
Identities = 438/455 (96%), Gaps = 12/455 (2%)
Strand = Plus / Minus
Query: 1 caagtgaaaaatatttatacatttgtaaatgatatatgtttttaaaagaactagaatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 caagtgaaaaatatttatacatttgtaaatgatatatgtttttaaaagaactagaatgtt 1679
Query: 61 gagaatttgtaatttatgggaagatacaataaccggaaagtacaagattt-aaacaaact 119
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1678 gagaatttgtaatttatgcgaagatacaataaccggaaagtaaaagatttcaaacaaact 1619
Query: 120 cgttttcagatttgaatactccaccatgtagtgctcgcagctacgattc-atcttgcccg 178
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1618 cgttttcacatttgaatactccaccatgtagtgctcgcagctacgattccatcttgcccg 1559
Query: 179 aaatctggtcactccaatgaacgtct-caccggaaaatc-acaagttaca-tggtcaaaa 235
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 1558 aaatctggtcactccaatgaacgtcttcaccggaaaatccacaagttacaatggtcaaaa 1499
Query: 236 ccattt-gtcaaaaa-aagttc-aacaactatgactggaatcttatacattt-aaaagaa 291
|||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1498 ccattttgtcaaaaacaagttccaacaactatgactggaatcttatacattttaaaagaa 1439
Query: 292 cacttgactt-agcgtgaagagagtatttgggcgttggtgcacagatctctcaactcctc 350
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1438 cacttgactttagcgtgaagagagtattttggcgttggtgcacagatctctcaactcctc 1379
Query: 351 agacatcgacctctgactatctatggtcttcttctacacaataatattaggtactaacta 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1378 agacatcgacctctgactatctatggtcttcttctacacaataatattacgtactaacta 1319
Query: 411 ctcctgcaaaggatcttagctattgttaaatgcaa 445
|| |||||||||||||||| |||||||||||||||
Sbjct: 1318 ct-ctgcaaaggatcttag-tattgttaaatgcaa 1286
>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
stress-responsive proline dehydrogenase (POX) (PRO1)
(ERD5) nearly identical to SP|P92983 Proline oxidase,
mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
induced proline dehydrogenase) [Arabidopsis thaliana];
identical to cDNA proline oxidase precursor GI:1817543
Length = 1732
Score = 36.2 bits (18), Expect = 0.24
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 16 tatacatttgtaaatgatatat 37
||||||||||| ||||||||||
Sbjct: 1689 tatacatttgtgaatgatatat 1668
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At3g43390, At2g05560, At4g08880, At1g34730, At1g27790,
At1g34740, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 4407
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 357 cgacctctgactatcta 373
|||||||||||||||||
Sbjct: 3686 cgacctctgactatcta 3702
>At5g57380.1 68418.m07169 fibronectin type III domain-containing protein / PHD
finger protein-related contains Pfam profiles PF00041:
Fibronectin type III domain, PF00628: PHD-finger
Length = 1803
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 376 gtcttcttctacacaa 391
||||||||||||||||
Sbjct: 951 gtcttcttctacacaa 966
>At5g49570.1 68418.m06135 transglutaminase-like family protein low similarity to
peptide:N-glycanase PNGase [Mus musculus] GI:8347622;
contains Pfam profile PF01841: Transglutaminase-like
superfamily
Length = 2438
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 aatatttatacatttg 25
||||||||||||||||
Sbjct: 2265 aatatttatacatttg 2250
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,368
Number of Sequences: 29161
Number of extensions: 13368
Number of successful extensions: 1040
Number of sequences better than 10.0: 28
length of query: 445
length of database: 44,058,232
effective HSP length: 17
effective length of query: 428
effective length of database: 43,562,495
effective search space: 18644747860
effective search space used: 18644747860
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)