BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226831_RAFL14_60_L21.r
(399 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A) 700 0.0
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)... 131 5e-30
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D) 98 7e-20
At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygena... 62 4e-09
At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygena... 62 4e-09
>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
Length = 545
Score = 700 bits (353), Expect = 0.0
Identities = 392/401 (97%), Gaps = 3/401 (0%)
Strand = Plus / Minus
Query: 1 aactccgaagatcgtctatggattgtcatgaatattcaagaaaatacataaccattcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aactccgaagatcgtctatggattgtcatgaatattcaagaaaatacataaccattcata 486
Query: 61 aaagaggaacgagcttcgctgattaaaacaaaggataatcgacaaagaagggttactact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaagaggaacgagcttcgctgattaaaacaaaggataatcgacaaagaagggttactact 426
Query: 121 agctcaaatatcaacaaaaattcataataaaggaaaagaaaatttgtgggtgagtgaatg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 425 agctcaaatatcaacaaaaattcataataaacgaaaagaaaatttgtgggtgagtgaatg 366
Query: 181 gaatggagtcatatcttctccttcagtctcactttttcctgaaagagcatccttcagctg 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 gaatggagtcatatcttcttcttcagtctcactttttcctgaaagagcatccttcag-tg 307
Query: 241 agctttgcctt-cctcctgtgggtgtgcaca-caaagtctggcagtttccacacatcaca 298
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 306 agctttgccttccctcctgtgggtgtgcagagcaaagtctggcagtttccacacatcaca 247
Query: 299 acggtctgagagtgggtgaacaaagtcgtaatgttaaagcagccttgacacttgacatcc 358
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 246 acggtctgagagtggctgaacacagtcgtaatgttaaagcagccttgacacttgacatcc 187
Query: 359 atgaaaaaggaattgggtgattgaacaagacgcttgagctt 399
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 186 atgaaaaacgaattgggtgattgaacaagacgcttgagctt 146
>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) identical to cDNA
ribosomal protein S27 (ARS27A) GI:4193381
Length = 503
Score = 131 bits (66), Expect = 5e-30
Identities = 162/190 (85%), Gaps = 3/190 (1%)
Strand = Plus / Minus
Query: 212 ctttttcctgaaagagcatccttcagctgagctttgcctt-cctcctgtgggtgtgcaca 270
|||| ||||||||||||||||||| | ||||||||||||| |||||||| || |||||
Sbjct: 316 ctttctcctgaaagagcatccttcgg-tgagctttgcctttcctcctgtaggctggcaca 258
Query: 271 caaa-gtctggcagtttccacacatcacaacggtctgagagtgggtgaacaaagtcgtaa 329
|| |||||||||||||| |||| |||||| ||||| ||||| |||| | ||| || |
Sbjct: 257 gaattgtctggcagtttccgcacaccacaacagtctgcgagtgactgaaaacagtagtga 198
Query: 330 tgttaaagcagccttgacacttgacatccatgaaaaaggaattgggtgattgaacaagac 389
|||| ||||||||||| ||||| ||||||||||| ||||||||||| || || |||||||
Sbjct: 197 tgttgaagcagccttggcacttcacatccatgaagaaggaattgggagactggacaagac 138
Query: 390 gcttgagctt 399
||||||||||
Sbjct: 137 gcttgagctt 128
>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
Length = 570
Score = 97.6 bits (49), Expect = 7e-20
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 275 gtctggcagtttccacacatcacaacggtctgagagtgggtgaacaaagtcgtaatgtta 334
||||| ||||||||||| | |||||| || ||||| ||| |||||| ||| || |||||
Sbjct: 257 gtctgacagtttccacataccacaacagtttgagaatggctgaacacagtggttatgttg 198
Query: 335 aagcagccttgacacttgacatccatgaaaaaggaattgggtgattgaacaagacgcttg 394
||||| || |||||||| ||||||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 197 aagcatccctgacacttaacatccatgaagaaggagttgggagattgcacgagacgcttg 138
Query: 395 agctt 399
|||||
Sbjct: 137 agctt 133
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 207 tctcactttttcctgaaagagcatcc 232
|||||||| |||||||||||||||||
Sbjct: 326 tctcacttcttcctgaaagagcatcc 301
>At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase family protein
contains Pfam profiles PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family, PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 2178
Score = 61.9 bits (31), Expect = 4e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 357 ccatgaaaaaggaattgggtgattgaacaagacgcttgagctt 399
||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 99 ccatgaaaaaggaattgggagactgaacaagacgtttgagctt 57
>At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase family protein
contains Pfam profiles PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family, PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 2223
Score = 61.9 bits (31), Expect = 4e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 357 ccatgaaaaaggaattgggtgattgaacaagacgcttgagctt 399
||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 144 ccatgaaaaaggaattgggagactgaacaagacgtttgagctt 102
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,981
Number of Sequences: 29161
Number of extensions: 13981
Number of successful extensions: 1125
Number of sequences better than 10.0: 35
length of query: 399
length of database: 44,058,232
effective HSP length: 17
effective length of query: 382
effective length of database: 43,562,495
effective search space: 16640873090
effective search space used: 16640873090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)