BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226812_RAFL14_59_H12.r
(398 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57100.1 68418.m07129 transporter-related low similarity... 652 0.0
At3g62560.1 68416.m07028 GTP-binding protein, putative simi... 44 9e-04
At3g02750.1 68416.m00267 protein phosphatase 2C family prot... 44 9e-04
At3g60750.1 68416.m06796 transketolase, putative strong sim... 42 0.003
At3g44610.1 68416.m04796 protein kinase family protein simi... 42 0.003
>At5g57100.1 68418.m07129 transporter-related low similarity to GDP-fucose
transporter [Caenorhabditis elegans] GI:13940504,
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 1592
Score = 652 bits (329), Expect = 0.0
Identities = 390/401 (97%), Gaps = 7/401 (1%)
Strand = Plus / Minus
Query: 1 aaatttcaagatattcagcacatatacaccctcccaaaattgacagaaaataaaagatag 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1592 aaatttcaagatattcagcacatatacacc-tcccaaaattgacagaaaataaaagatac 1534
Query: 61 aagaacatttgatgacaagacaaaagaaaacaaaaaacaaaaaaatgaattgaaagagtt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1533 aagaacatttgatgacaagacaaaagaaaacaaaaa-caaaaaaatgaattgaaagagtt 1475
Query: 121 gttgtcaaaagaaaagttgtttattttcagagatgaaattagaaaaatggaaacaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 gttgtcaaaagaaaagttgtttattttcagagatgaaattagaaaaatggaaacaagaat 1415
Query: 181 catcgacaaaaacaaaaagttggaattagaatctaatgtaatgtggaataatcaaaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 catcgacaaaaacaaaaagttggaattagaatctaatgtaatgtggaataatcaaaacta 1355
Query: 241 tataataaaaaagttagcctagactagaaagcttcggagcccgtaaggttcaagacttct 300
||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 1354 tataatacaaaagttagcctagactagacagcttcggag-ccgtaaggttcaaga-ttct 1297
Query: 301 tgtcatcat-cttaagatcactgaatcttgacttcttct-cgagagagcagaagaagaag 358
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1296 tgtcatcatccttaagatcactgaatcttgacttcttctccgagagagcagaagaagaag 1237
Query: 359 aagaagttttaagagattgacctct-gtgttaaggtatgta 398
| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1236 acgaagttttaagagattgacctctcgtgttaaggtatgta 1196
>At3g62560.1 68416.m07028 GTP-binding protein, putative similar to GTP-binding
protein SAR1A (SP:O04834) [Arabidopsis thaliana]; small
GTP-binding protein Bsar1a - Brassica campestris,
EMBL:U55035
Length = 803
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 339 cgagagagcagaagaagaagaagaag 364
|||||||| |||||||||||||||||
Sbjct: 20 cgagagagaagaagaagaagaagaag 45
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 348 agaagaagaagaagaag 364
|||||||||||||||||
Sbjct: 32 agaagaagaagaagaag 48
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 348 agaagaagaagaagaag 364
|||||||||||||||||
Sbjct: 35 agaagaagaagaagaag 51
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 348 agaagaagaagaagaag 364
|||||||||||||||||
Sbjct: 38 agaagaagaagaagaag 54
>At3g02750.1 68416.m00267 protein phosphatase 2C family protein / PP2C family
protein similar to protein phosphatase-2C; PP2C
(GI:3643088) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain;
Length = 2816
Score = 44.1 bits (22), Expect = 9e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 88 aaacaaaaaacaaaaaaatgaattgaaaga 117
|||||||||| ||||||| |||||||||||
Sbjct: 163 aaacaaaaaagaaaaaaaggaattgaaaga 134
>At3g60750.1 68416.m06796 transketolase, putative strong similarity to
transketolase 1 [Capsicum annuum] GI:3559814; contains
Pfam profiles PF02779: Transketolase, pyridine binding
domain, PF02780: Transketolase, C-terminal domain,
PF00456: Transketolase, thiamine diphosphate binding
domain
Length = 2839
Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 340 gagagagcagaagaagaagaagaag 364
||||||| |||||||||||||||||
Sbjct: 264 gagagagaagaagaagaagaagaag 240
>At3g44610.1 68416.m04796 protein kinase family protein similar to viroid
symptom modulation protein (protein kinase)[Lycopersicon
esculentum] gi|7672777|gb|AAF66637; contains protein
kinase domain, Pfam:PF00069
Length = 1561
Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 340 gagagagcagaagaagaagaagaag 364
||||||| |||||||||||||||||
Sbjct: 41 gagagagaagaagaagaagaagaag 17
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,872
Number of Sequences: 29161
Number of extensions: 45872
Number of successful extensions: 12402
Number of sequences better than 10.0: 1388
length of query: 398
length of database: 44,058,232
effective HSP length: 17
effective length of query: 381
effective length of database: 43,562,495
effective search space: 16597310595
effective search space used: 16597310595
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)