BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226800_RAFL14_58_E18.r
(427 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10530.1 68414.m01186 expressed protein 813 0.0
At1g10522.1 68414.m01185 expressed protein 813 0.0
At1g60010.1 68414.m06761 expressed protein 42 0.004
At4g35020.1 68417.m04967 Rac-like GTP-binding protein (ARAC... 40 0.015
At2g33550.1 68415.m04112 gt-2-related weak similarity to gt... 40 0.015
>At1g10530.1 68414.m01186 expressed protein
Length = 996
Score = 813 bits (410), Expect = 0.0
Identities = 424/426 (99%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 1 agatggcaaaagctttttattgttcttattcagaagctttgtgtcctctgaatcaatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 agatggcaaaagctttttattgttcttattcagaagctttgtgtcctctgaatcaatctc 937
Query: 61 acacatcaacaaaaaccacacttcttacaaacttccatcgatttccccatctgcaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 acacatcaacaaaaaccacacttcttacaaacttccatcgatttccccatctgcaaaaat 877
Query: 121 atatacatcgacgatagagggaaaaaaaaggaagaagaagttctgttttgttgactctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 atatacatcgacgatagagggaaaaaaaaggaagaagaagttctgttttgttgactctct 817
Query: 181 tgagctttctctgtacttatctcttcacatcttcatctagactccatccgtttatcctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgagctttctctgtacttatctcttcacatcttcatctagactccatccgtttatcctct 757
Query: 241 gtaatatccaggaaaaaaaaaaaacagaaccaaaaaattattcagtagagtttcggatca 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtaatatccagg-aaaaaaaaaaacagaaccaaaaaattattcagtagagtttcggatca 698
Query: 301 ggctctccactctagatccagatactgtttcgaacaaaaaccaaaaacattcagctagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggctctccactctagatccagatactgtttcgaacaaaaaccaaaaacattcagctagta 638
Query: 361 gcttcggagatgctctgaagagacggcctccatgttttagacctttaagagggaagttga 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 637 gcttcggagatgctctgaagagacggcctccatgttttaga-ctttaagagggaagttga 579
Query: 421 attcct 426
||||||
Sbjct: 578 attcct 573
>At1g10522.1 68414.m01185 expressed protein
Length = 1371
Score = 813 bits (410), Expect = 0.0
Identities = 424/426 (99%), Gaps = 2/426 (0%)
Strand = Plus / Plus
Query: 1 agatggcaaaagctttttattgttcttattcagaagctttgtgtcctctgaatcaatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 agatggcaaaagctttttattgttcttattcagaagctttgtgtcctctgaatcaatctc 1007
Query: 61 acacatcaacaaaaaccacacttcttacaaacttccatcgatttccccatctgcaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 acacatcaacaaaaaccacacttcttacaaacttccatcgatttccccatctgcaaaaat 1067
Query: 121 atatacatcgacgatagagggaaaaaaaaggaagaagaagttctgttttgttgactctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 atatacatcgacgatagagggaaaaaaaaggaagaagaagttctgttttgttgactctct 1127
Query: 181 tgagctttctctgtacttatctcttcacatcttcatctagactccatccgtttatcctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 tgagctttctctgtacttatctcttcacatcttcatctagactccatccgtttatcctct 1187
Query: 241 gtaatatccaggaaaaaaaaaaaacagaaccaaaaaattattcagtagagtttcggatca 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 gtaatatccagg-aaaaaaaaaaacagaaccaaaaaattattcagtagagtttcggatca 1246
Query: 301 ggctctccactctagatccagatactgtttcgaacaaaaaccaaaaacattcagctagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 ggctctccactctagatccagatactgtttcgaacaaaaaccaaaaacattcagctagta 1306
Query: 361 gcttcggagatgctctgaagagacggcctccatgttttagacctttaagagggaagttga 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1307 gcttcggagatgctctgaagagacggcctccatgttttaga-ctttaagagggaagttga 1365
Query: 421 attcct 426
||||||
Sbjct: 1366 attcct 1371
>At1g60010.1 68414.m06761 expressed protein
Length = 965
Score = 42.1 bits (21), Expect = 0.004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 358 gtagcttcggagatgctctgaagagacggcctccatgtttt 398
|||||||| ||||||||||| | || ||||||||||||||
Sbjct: 658 gtagcttcagagatgctctgcaatgatggcctccatgtttt 618
>At4g35020.1 68417.m04967 Rac-like GTP-binding protein (ARAC3) / Rho-like
GTP-binding protein (ROP6) identical to SP|Q38912
RAC-like GTP binding protein ARAC3 (GTP-binding protein
ROP6) {Arabidopsis thaliana}; identical to cDNA Rho-like
GTP binding protein (Rop6) GI:2645642
Length = 1064
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 gaaaaaaaaggaagaagaag 160
||||||||||||||||||||
Sbjct: 29 gaaaaaaaaggaagaagaag 48
>At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2 (GI:20249) [Oryza
sativa]
Length = 1194
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 141 gaaaaaaaaggaagaagaag 160
||||||||||||||||||||
Sbjct: 1113 gaaaaaaaaggaagaagaag 1094
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,634
Number of Sequences: 29161
Number of extensions: 29634
Number of successful extensions: 3000
Number of sequences better than 10.0: 124
length of query: 427
length of database: 44,058,232
effective HSP length: 17
effective length of query: 410
effective length of database: 43,562,495
effective search space: 17860622950
effective search space used: 17860622950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)