BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226783_RAFL14_57_G15.r
(433 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05690.1 68416.m00636 CCAAT-binding transcription factor... 844 0.0
At5g06510.3 68418.m00734 CCAAT-binding transcription factor... 62 4e-09
At5g06510.2 68418.m00733 CCAAT-binding transcription factor... 62 4e-09
At5g06510.1 68418.m00732 CCAAT-binding transcription factor... 62 4e-09
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finge... 44 0.001
>At3g05690.1 68416.m00636 CCAAT-binding transcription factor (CBF-B/NF-YA) family
protein contains Pfam profile: PF02045 CCAAT-binding
transcription factor (CBF-B/NF-YA) subunit B
Length = 1464
Score = 844 bits (426), Expect = 0.0
Identities = 433/434 (99%), Gaps = 1/434 (0%)
Strand = Plus / Minus
Query: 1 ggtcttaaatatgttacataaaccacataacttaaaagttgttacagttgtttgagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 ggtcttaaatatgttacataaaccacataacttaaaagttgttacagttgtttgagaaac 1392
Query: 61 acacaaagccagagagagctacaaaatcagataacagagttttcttaaaacacacactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 acacaaagccagagagagctacaaaatcagataacagagttttcttaaaacacacactac 1332
Query: 121 tagttggaacaagtgggtttagtgaccaaacacatcattgttcttcaccagttttaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 tagttggaacaagtgggtttagtgaccaaacacatcattgttcttcaccagttttaacta 1272
Query: 181 cttttacactgaagataaatatatcaaagcttttttcacctcacggcgaagttaccttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 cttttacactgaagataaatatatcaaagcttttttcacctcacggcgaagttaccttaa 1212
Query: 241 tagagaatgagccaaagatgatttgcctgttcacagccaaagcggattggcaaaaaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 tagagaatgagccaaagatgatttgcctgttcacagccaaagcggattggcaaaaaggaa 1152
Query: 301 aatcctttataccaaggcaagagttctttatctctctccgtttgactgtgaaacggtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 aatcctttataccaaggcaagagttctttatctctctccgtttgactgtgaaacggtaaa 1092
Query: 361 ggatcaggttttgaaattgcagcagccattatccattgctgctgctgctgctat-cactt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1091 ggatcaggttttgaaattgcagcagccattatccattgctgctgctgctgctatccactt 1032
Query: 420 gctaggcattacca 433
||||||||||||||
Sbjct: 1031 gctaggcattacca 1018
>At5g06510.3 68418.m00734 CCAAT-binding transcription factor (CBF-B/NF-YA) family
protein contains Pfam profile: PF02045 CCAAT-binding
transcription factor (CBF-B/NF-YA) subunit B
Length = 1352
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 247 atgagccaaagatgatttgcctgttcacagccaaa 281
||||||||||||||||||||||||| |||||||||
Sbjct: 1202 atgagccaaagatgatttgcctgtttacagccaaa 1168
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 377 ttgcagcagccattatccattgctgctgc 405
|||||||||||| ||||||||||||||||
Sbjct: 1009 ttgcagcagccaatatccattgctgctgc 981
>At5g06510.2 68418.m00733 CCAAT-binding transcription factor (CBF-B/NF-YA) family
protein contains Pfam profile: PF02045 CCAAT-binding
transcription factor (CBF-B/NF-YA) subunit B
Length = 1600
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 247 atgagccaaagatgatttgcctgttcacagccaaa 281
||||||||||||||||||||||||| |||||||||
Sbjct: 1327 atgagccaaagatgatttgcctgtttacagccaaa 1293
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 377 ttgcagcagccattatccattgctgctgc 405
|||||||||||| ||||||||||||||||
Sbjct: 1134 ttgcagcagccaatatccattgctgctgc 1106
>At5g06510.1 68418.m00732 CCAAT-binding transcription factor (CBF-B/NF-YA) family
protein contains Pfam profile: PF02045 CCAAT-binding
transcription factor (CBF-B/NF-YA) subunit B
Length = 1329
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 247 atgagccaaagatgatttgcctgttcacagccaaa 281
||||||||||||||||||||||||| |||||||||
Sbjct: 1056 atgagccaaagatgatttgcctgtttacagccaaa 1022
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 377 ttgcagcagccattatccattgctgctgc 405
|||||||||||| ||||||||||||||||
Sbjct: 863 ttgcagcagccaatatccattgctgctgc 835
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) family protein
contains Pfam domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1614
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 391 atccattgctgctgctgctgct 412
||||||||||||||||||||||
Sbjct: 1188 atccattgctgctgctgctgct 1209
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,763
Number of Sequences: 29161
Number of extensions: 17763
Number of successful extensions: 2073
Number of sequences better than 10.0: 134
length of query: 433
length of database: 44,058,232
effective HSP length: 17
effective length of query: 416
effective length of database: 43,562,495
effective search space: 18121997920
effective search space used: 18121997920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)