BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226722_RAFL14_54_G01.r
(452 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing... 662 0.0
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing... 48 6e-05
At4g13840.1 68417.m02144 transferase family protein low sim... 42 0.004
At3g12050.2 68416.m01497 Aha1 domain-containing protein con... 42 0.004
At3g12050.1 68416.m01496 Aha1 domain-containing protein con... 42 0.004
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein contains
bromodomain, INTERPRO:IPR001487
Length = 1717
Score = 662 bits (334), Expect = 0.0
Identities = 436/454 (96%), Gaps = 12/454 (2%)
Strand = Plus / Minus
Query: 1 aaacaaaagacttatgtccacttttctatacaattaacaagaaccctaatacagtaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 aaacaaaagacttatgtccacttttctatacaattaacaagaaccctaatacagtaatac 1633
Query: 61 agaaacaagtccgatggtggaaaagaaggtaacctagctttgcctattttaagagatgca 120
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1632 agaaacaa-tccgatggtggaaaagaaggtaacctagctttgc-tattttaagagatgca 1575
Query: 121 aaaaaaaaaaaaaaaagttggaagttgacaccacgatggctcccacctatgcctaaatac 180
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1574 aaaaaaaaaaaaaaa-gttggaagttgacaccacgatggctcccacctatgc-taaatac 1517
Query: 181 tttcacaatcgtggttaattaccggtatcagattcatgtcctgagctatcactgtcagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 tttcacaatcgtggttaattaccggtatcagattcatgtcctgagctatcactgtcagag 1457
Query: 241 ccactagaaccccgagccgtgagccactaatagaagtgttagaactacttgatcct-caa 299
||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 1456 ccactagaa-cccgagcc-tgagccactactagaactgttagaactacttgatcctccaa 1399
Query: 300 catttacttcttgtcgaaaagtagatgccacatgacctaattcagtaacttttgacgatt 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 catttacttcttgtcgaacagtagatgccacatgacctaattcagtaacttttgacgatt 1339
Query: 360 -aaggccagcttactaccgtg-tcgattcgtgcacaatattgtgaaaaga-tcagcatct 416
|||||||| |||||| |||| |||||||||||||| ||||||||||||| |||||||||
Sbjct: 1338 caaggccag-ttactagcgtgttcgattcgtgcacactattgtgaaaagattcagcatct 1280
Query: 417 ctttctgagtctaatgcctgtt-ctcctttttct 449
||||||||||||||| |||||| |||||||||||
Sbjct: 1279 ctttctgagtctaatccctgttcctcctttttct 1246
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein similar to
SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439: Bromodomain
Length = 1761
Score = 48.1 bits (24), Expect = 6e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 260 tgagccactaatagaagtgttagaactacttgatcc 295
|||| ||||| ||||| |||||||||||||||||||
Sbjct: 1526 tgagtcactactagaactgttagaactacttgatcc 1491
Score = 38.2 bits (19), Expect = 0.062
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 395 tattgtgaaaagat-cagcatctctttctga 424
||||||||| |||| ||||||||||||||||
Sbjct: 1380 tattgtgaacagattcagcatctctttctga 1350
>At4g13840.1 68417.m02144 transferase family protein low similarity to
acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
concinna] GI:6166328; contains Pfam profile PF02458:
Transferase family
Length = 1642
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 118 gcaaaaaaaaaaaaaaaaagt 138
|||||||||||||||||||||
Sbjct: 1526 gcaaaaaaaaaaaaaaaaagt 1546
>At3g12050.2 68416.m01497 Aha1 domain-containing protein contains Pfam PF05146:
Aha1 domain; similar to Protein C14orf3 (HSPC322)
(Swiss-Prot:O95433) [Homo sapiens]
Length = 1316
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 119 caaaaaaaaaaaaaaaaagtt 139
|||||||||||||||||||||
Sbjct: 11 caaaaaaaaaaaaaaaaagtt 31
>At3g12050.1 68416.m01496 Aha1 domain-containing protein contains Pfam PF05146:
Aha1 domain; similar to Protein C14orf3 (HSPC322)
(Swiss-Prot:O95433) [Homo sapiens]
Length = 1433
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 119 caaaaaaaaaaaaaaaaagtt 139
|||||||||||||||||||||
Sbjct: 11 caaaaaaaaaaaaaaaaagtt 31
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,949
Number of Sequences: 29161
Number of extensions: 26949
Number of successful extensions: 6335
Number of sequences better than 10.0: 353
length of query: 452
length of database: 44,058,232
effective HSP length: 17
effective length of query: 435
effective length of database: 43,562,495
effective search space: 18949685325
effective search space used: 18949685325
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)