BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226720_RAFL14_54_F14.r
(473 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomeras... 813 0.0
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomeras... 42 0.004
At5g53230.1 68418.m06617 hypothetical protein contains Pfam... 38 0.065
At5g24320.2 68418.m02866 WD-40 repeat family protein contai... 36 0.26
At5g24320.1 68418.m02865 WD-40 repeat family protein contai... 36 0.26
>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, putative /
FK506-binding protein, putative similar to rof1
[Arabidopsis thaliana] GI:1373396
Length = 2130
Score = 813 bits (410), Expect = 0.0
Identities = 457/466 (98%), Gaps = 5/466 (1%)
Strand = Plus / Minus
Query: 1 agaacataactactagatatgatatatcaagctattggggtcattaacttggagtagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 agaacataactactagatatgatatatcaagctattggggtcattaacttggagtagatc 2071
Query: 61 ctcgtttattacaagtctgttttataacaactctgaaacagctaacacacaccaagattg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2070 ctcgtttattacaagtctgttttataacaactctgaaacag-taacacacaccaagattg 2012
Query: 121 attacaaagagtaaaaagagaaatttgtagacttttcacatttagtttttggaatcaatg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 attacaaagagtaaaaacagaaatttgtagacttttcacatttagtttttggaatcaatg 1952
Query: 181 cgactctctaaagtgattcaaagactcatgccttggtgtcaatacctcatcgccttgtgc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1951 cgactctctaaagtgattcaaagactcatgccttggtgtcaatac-tcatcgc-ttgtgc 1894
Query: 241 ttccttctgagcttcctttgtgtggctcaagcattttcgacaaaatgttgctgtaaaact 300
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1893 ttccttctgag-ttcctttgtgtggctcaagcattttcgacaacatgttgctgtaaaact 1835
Query: 301 tagcatctttcttgttatactctttcaccttctccttcaacttcttatattctatcttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 tagcatctttcttgttatactctttcaccttctccttcaacttcttatattctatcttca 1775
Query: 361 cctccttgttgtctggatcgatttcgagagctttcttgatatcaagctcagccagatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 cctccttgttgtctggatcgatttcgagagctttcttgatatcaagctcagccagatcaa 1715
Query: 421 gatccggcggtctccaagtaggcatgtggtctcctatacattgcct 466
||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct: 1714 gatcc-gccgtctccaagtaggcatgtgctctcctatacattgcct 1670
>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / FK506-binding
protein (ROF1) identical to rotamase FKBP (ROF1)
GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252
(5), 510-517 (1996))
Length = 1974
Score = 42.1 bits (21), Expect = 0.004
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 330 ttctccttcaacttcttatattctatcttcacctccttgttgtctggatcgatttcgaga 389
|||||||||||| | || | |||| |||||| ||| |||||| ||||||||||| ||
Sbjct: 1636 ttctccttcaaccttttctgctctagcttcacttccctgttgttgggatcgatttcaagg 1577
Query: 390 gctttcttgatatcaagctcagcca 414
|| ||||||| ||||| ||| ||||
Sbjct: 1576 gccttcttgacatcaaactcggcca 1552
>At5g53230.1 68418.m06617 hypothetical protein contains Pfam profile PF03478:
Protein of unknown function (DUF295)
Length = 1077
Score = 38.2 bits (19), Expect = 0.065
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 292 tgtaaaacttagcatctttcttg 314
||||||||||| |||||||||||
Sbjct: 577 tgtaaaacttatcatctttcttg 555
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam PF00400: WD
domain, G-beta repeat; similar to WD-repeat protein 5
(WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
Length = 2097
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 315 ttatactctttcaccttc 332
||||||||||||||||||
Sbjct: 695 ttatactctttcaccttc 678
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam PF00400: WD
domain, G-beta repeat; similar to WD-repeat protein 5
(WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
Length = 2085
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 315 ttatactctttcaccttc 332
||||||||||||||||||
Sbjct: 695 ttatactctttcaccttc 678
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,420
Number of Sequences: 29161
Number of extensions: 17420
Number of successful extensions: 1461
Number of sequences better than 10.0: 33
length of query: 473
length of database: 44,058,232
effective HSP length: 17
effective length of query: 456
effective length of database: 43,562,495
effective search space: 19864497720
effective search space used: 19864497720
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)