BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226559_RAFL14_45_G04.r
(428 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g35560.1 68414.m04415 TCP family transcription factor, p... 817 0.0
At1g69690.1 68414.m08020 TCP family transcription factor, p... 56 2e-07
At1g72010.1 68414.m08324 TCP family transcription factor, p... 48 6e-05
At3g47620.1 68416.m05184 TCP family transcription factor, p... 42 0.004
At1g73360.1 68414.m08491 homeobox-leucine zipper family pro... 40 0.015
>At1g35560.1 68414.m04415 TCP family transcription factor, putative similar to
PCF2 (GI:2580440) and PCF1 (GI:2580438) [Oryza sativa]
Length = 1410
Score = 817 bits (412), Expect = 0.0
Identities = 424/428 (99%)
Strand = Plus / Plus
Query: 1 actccaagaatttataggttataagtaaaaattcagtacaagtttgtttgtttgtttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccaagaatttataggttataagtaaaaattcagtacaagtttgtttgtttgtttatt 60
Query: 61 ccattttcttgtgtgtttttttccccataacttataaattttataagcaatatggagtcc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 ccattttcttgtgtgtttttttccccataatttataaattttataagcaatatggagtcc 120
Query: 121 cacaaaaaaaaccagagcaacaacaacaccactggttcggcccatctggtcccatccatg 180
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacaacaacaaccagagcaacaacaacaccactggttcggcccatctggtcccatccatg 180
Query: 181 ggaccaatctccggttcagtctcattaaccaccactgctccaaactccactaccaccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaccaatctccggttcagtctcattaaccaccactgctccaaactccactaccaccacc 240
Query: 241 gtcaccgccgctaaaacacccgcaaaacgaccgtccaaggaccgtcacatcaaagtagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcaccgccgctaaaacacccgcaaaacgaccgtccaaggaccgtcacatcaaagtagac 300
Query: 301 ggacgtgggcggaggatacgtatgccggctatctgcgcagcacgtgtcttccaactaaca 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggacgtggccggaggatacgtatgccggctatctgcgcagcacgtgtcttccaactaaca 360
Query: 361 cgtgagttacaacacaaatcggacggcgagactatagagtggctgctccaacaagcggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgtgagttacaacacaaatcggacggcgagactatagagtggctgctccaacaagcggag 420
Query: 421 ccagctat 428
||||||||
Sbjct: 421 ccagctat 428
>At1g69690.1 68414.m08020 TCP family transcription factor, putative similar to
PCF1 (GI:2580438) and PCF2 [(GI:2580440) Oryza sativa]
Length = 1628
Score = 56.0 bits (28), Expect = 2e-07
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 314 ggatacgtatgccggctatctgcgcagcacgtgtcttccaactaacacgtgagttacaac 373
|||| |||||||| || || || || ||||||||||| || || ||||||||| | |
Sbjct: 419 ggatccgtatgcctgccatgtgtgctgcacgtgtctttcagctcacacgtgagcttggtc 478
Query: 374 acaaatcggacggcgagactatagagtggctgctccaacaagcggagccagc 425
||||||| ||||| || ||||| |||||||| ||||||||||| || |||||
Sbjct: 479 acaaatccgacggtgaaactattgagtggctactccaacaagcagaaccagc 530
>At1g72010.1 68414.m08324 TCP family transcription factor, putative PCF2
(GP:2580440) [Oryza sativa]
Length = 1709
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 397 gagtggctgctccaacaagcggagccagctat 428
|||||||| ||||||||||| |||||||||||
Sbjct: 587 gagtggcttctccaacaagctgagccagctat 618
>At3g47620.1 68416.m05184 TCP family transcription factor, putative
auxin-induced basic helix-loop-helix transcription
factor - Gossypium hirsutum, EMBL:AF165924
Length = 1919
Score = 42.1 bits (21), Expect = 0.004
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 376 aaatcggacggcgagactatagagtggctgctccaacaagc 416
||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 606 aaatccgacggtgagacaatagagtggcttcttcaacaagc 646
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein protodermal factor2
(GI:14276060) [Arabidopsis thaliana]; similar to
homeobox protein GI:1173621 from [ Phalaenopsis sp.]
Length = 3067
Score = 40.1 bits (20), Expect = 0.015
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 229 actaccaccaccgtcaccgccgct 252
||||||||||||||| ||||||||
Sbjct: 764 actaccaccaccgtctccgccgct 741
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,414
Number of Sequences: 29161
Number of extensions: 15414
Number of successful extensions: 1553
Number of sequences better than 10.0: 71
length of query: 428
length of database: 44,058,232
effective HSP length: 17
effective length of query: 411
effective length of database: 43,562,495
effective search space: 17904185445
effective search space used: 17904185445
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)