BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226554_RAFL14_44_N13.r
(435 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11320.1 68416.m01376 phosphate translocator-related low... 850 0.0
At5g05820.1 68418.m00640 phosphate translocator-related low... 88 7e-17
At5g10330.1 68418.m01198 histidinol-phosphate aminotransfer... 40 0.015
At5g13840.1 68418.m01618 WD-40 repeat family protein contai... 38 0.059
At3g26810.1 68416.m03354 transport inhibitor response prote... 36 0.23
>At3g11320.1 68416.m01376 phosphate translocator-related low similarity to
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275, phosphate
translocator [Nicotiana tabacum] GI:403023; contains Pfam
profile: PF00892 Integral membrane protein DUF6
Length = 1723
Score = 850 bits (429), Expect = 0.0
Identities = 432/433 (99%)
Strand = Plus / Minus
Query: 3 aaagaaaaaaagctttgtcctcttccattaattaatcagtgttgtaaatgtttgatatca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 aaagaaaaaaagctttgtcctcttccattaattaatcagtgttgtaaatgtttgatatca 1662
Query: 63 caaaactagatgtaaagaatcgacaacaaaaagaagaagctaaatcgaagttactcttag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 caaaactagatgtaaagaatcgacaacaaaaagaagaagctaaatcgaagttactcttag 1602
Query: 123 aacaacctacgacgaaagcagtagaggatccgattaacaaaaaaggaacaaaagaaggga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 aacaacctacgacgaaagcagtagaggatccgattaacaaaaaaggaacaaaagaaggga 1542
Query: 183 aaaaaaatcaattatttgtgaagtcctctaaatgattacttttggtactctcatcctttg 242
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 aaaaaaatcacttatttgtgaagtcctctaaatgattacttttggtactctcatcctttg 1482
Query: 243 gtattgctttcacgcatcctttgcttttggtccaaagatgctgtgtaaggtttttcagtt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 gtattgctttcacgcatcctttgcttttggtccaaagatgctgtgtaaggtttttcagtt 1422
Query: 303 cacagtggaggaaacttgcctgtgtttgtttacctgagggactgaacaaatataacgaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 cacagtggaggaaacttgcctgtgtttgtttacctgagggactgaacaaatataacgaat 1362
Query: 363 gcttcttttttatttgcttcgtttcttggcttcgctgtagaggataactccacagacagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 gcttcttttttatttgcttcgtttcttggcttcgctgtagaggataactccacagacagt 1302
Query: 423 gagcgagtaacct 435
|||||||||||||
Sbjct: 1301 gagcgagtaacct 1289
>At5g05820.1 68418.m00640 phosphate translocator-related low similarity to
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275,
glucose-6-phosphate/phosphate-translocator precursor [Zea
mays] GI:2997589; contains Pfam profile PF00892: Integral
membrane protein
Length = 1669
Score = 87.7 bits (44), Expect = 7e-17
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 375 tttgcttcgtttcttggcttcgctgtagaggataactccacagacagtgagcgagtaacc 434
|||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 1245 tttgtttcgtttcttggcttcgctgtacaggataactccacagacggtgagggagtaacc 1186
Score = 34.2 bits (17), Expect = 0.93
Identities = 30/33 (90%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 54 ttgatatcacaaaactaga-tgtaaagaatcga 85
|||| |||||||||||| | |||||||||||||
Sbjct: 1615 ttgacatcacaaaactaaaatgtaaagaatcga 1583
>At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase, putative similar
to histidinol-phosphate aminotransferase GB:CAA70403
[GI:335562] from [Nicotiana tabacum], Nicotiana
plumbaginifolia [GI:12055099]
Length = 1554
Score = 40.1 bits (20), Expect = 0.015
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 172 aaaagaagggaaaaaaaatcaatt 195
||||| ||||||||||||||||||
Sbjct: 1457 aaaaggagggaaaaaaaatcaatt 1434
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 WD-40 repeats
(PF00400); similar to Fzr1 (GI:6463679){Homo sapiens}
Length = 1892
Score = 38.2 bits (19), Expect = 0.059
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 171 caaaagaagggaaaaaaaa 189
|||||||||||||||||||
Sbjct: 171 caaaagaagggaaaaaaaa 189
>At3g26810.1 68416.m03354 transport inhibitor response protein, putative E3
ubiquitin ligase SCF complex F-box subunit; similar to
transport inhibitor response 1 GI:2352492 from
[Arabidopsis thaliana]
Length = 2401
Score = 36.2 bits (18), Expect = 0.23
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 172 aaaagaagggaaaaaaaatcaa 193
||||||||| ||||||||||||
Sbjct: 151 aaaagaaggaaaaaaaaatcaa 130
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,251
Number of Sequences: 29161
Number of extensions: 19251
Number of successful extensions: 1672
Number of sequences better than 10.0: 50
length of query: 435
length of database: 44,058,232
effective HSP length: 17
effective length of query: 418
effective length of database: 43,562,495
effective search space: 18209122910
effective search space used: 18209122910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)