BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226544_RAFL14_43_C06.r
         (409 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16566.1  68417.m02507 histidine triad family protein / H...   795   0.0  
At4g33180.1  68417.m04726 hydrolase, alpha/beta fold family ...    36   0.22 
At4g30900.1  68417.m04388 expressed protein                        36   0.22 
At4g22160.2  68417.m03203 expressed protein                        36   0.22 
At4g22160.1  68417.m03202 expressed protein                        36   0.22 

>At4g16566.1 68417.m02507 histidine triad family protein / HIT family protein
           contains Pfam domain, PF01230: HIT family (histidine
           triad protein family)
          Length = 762

 Score =  795 bits (401), Expect = 0.0
 Identities = 408/409 (99%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatccttcatgtatacgtctcatacccataaagcatggaaacaatgagattggtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cagaatccttcatgtatacgtctcatacccataaagcatggaaacaatgagattggtgtt 703

                                                                       
Query: 61  aagtgttaactattggacaatggcagaaattacatataattacttgacacatccttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aagtgttaactattggacaatggcagaaattacatataattacttgacacatccttcttt 643

                                                                       
Query: 121 catatacaaaatctctaataatatttggcatttgttcacagatttgccagcaaaagaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 catatacaaaatctctaataatatttggcatttgttcacagatttgccagcaaaagaata 583

                                                                       
Query: 181 gaaaagagatattgcacagttttagcaaagagaagcaacgcaatgcggttaaacaagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaaaagagatattgcacagttttagcaaagagaagcaacgcaatgcggttaaacaagttg 523

                                                                       
Query: 241 ggttcagttacacctttgaaagaagaggccttatcttctctagcagtgtctcggcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggttcagttacacctttgaaagaagaggccttatcttctctagcagtgtctcggcttcaa 463

                                                                       
Query: 301 taaatccacccaaaggtcccaaagacttgtacttgatggctttccatctgggcacataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taaatccacccaaaggtcccaaagacttgtacttgatggctttccatctgggcacataag 403

                                                            
Query: 361 gcaactgcaaaacagtggagatggagatgatcaacactgttaaatggtg 409
           |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcaa-tgcaaaacagtggagatggagatgatcaacactgttaaatggtg 355



>At4g33180.1 68417.m04726 hydrolase, alpha/beta fold family protein low
           similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate
           hydrolase [Pseudomonas fluorescens] GI:1871461; contains
           Pfam profile PF00561: alpha/beta hydrolase fold
          Length = 1179

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 172 aaaagaatagaaaagaga 189
           ||||||||||||||||||
Sbjct: 697 aaaagaatagaaaagaga 714



>At4g30900.1 68417.m04388 expressed protein
          Length = 1405

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 155 ttcacagatttgccagcaaaag 176
           ||||||||||| ||||||||||
Sbjct: 102 ttcacagattttccagcaaaag 123



>At4g22160.2 68417.m03203 expressed protein
          Length = 698

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 377 ggagatggagatgatcaa 394
           ||||||||||||||||||
Sbjct: 281 ggagatggagatgatcaa 298



>At4g22160.1 68417.m03202 expressed protein
          Length = 684

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 377 ggagatggagatgatcaa 394
           ||||||||||||||||||
Sbjct: 281 ggagatggagatgatcaa 298



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,362
Number of Sequences: 29161
Number of extensions: 14362
Number of successful extensions: 1112
Number of sequences better than 10.0: 37
length of query: 409
length of database: 44,058,232
effective HSP length: 17
effective length of query: 392
effective length of database: 43,562,495
effective search space: 17076498040
effective search space used: 17076498040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)