BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226539_RAFL14_42_M15.r
(431 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,... 817 0.0
At5g66170.1 68418.m08336 senescence-associated family prote... 38 0.059
At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase... 36 0.23
At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase... 36 0.23
At3g26010.1 68416.m03240 F-box family protein contains Pfam... 36 0.23
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, putative / U6
snRNA-associated Sm-like protein, putative / Sm protein
F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 781
Score = 817 bits (412), Expect = 0.0
Identities = 425/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 1 agaacaaaataagctatattattgttattcgatcaaatcataaatacattaatgattgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaacaaaataagctatattattgttattcgatcaaatcataaatacattaatgattgaa 722
Query: 61 ataaggagtttttaaaccctttgctgtcgaagaataattaagaatattacgagaaaagaa 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ataaggagtttttaaacc-tttgctgtcgaagaataattaagaatattacgagaaaagaa 663
Query: 121 aaaaaaaatacattaatgattgttaagatgacatcagattgtgacgcagtgattgcgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaaaaaaatacattaatgattgttaagatgacatcagattgtgacgcagtgattgcgtca 603
Query: 181 tcaaaacacgataattaggctccaaagaccaacagtgattaaaaaaaatttcataacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcaaaacacgataattaggctccaaagaccaacagtgattaaaaaaaatttcataacaaa 543
Query: 241 taaaaatctagctatatctcagaatttgggagatgatttagacacaaactgagttgcgga 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 542 taaaaatctagctatatctcagaattttggagatgatttagacacaaactgagttgcgga 483
Query: 301 agaaaaagaaatgtcgaattcatgcagtggtgataaactctggttgctacaaatcctaca 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agaaaaagacatgtcgaattcatgcagtggtgataaactctggttgctacaaatcctaca 423
Query: 361 tttgtcatatgccagaggtagagaagaagatgaacattcatggtgatgaaagagagctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgtcatatgccagaggtagagaagaagatgaacattcatggtgatgaaagagagctat 363
Query: 421 gctccatc 428
||||||||
Sbjct: 362 gctccatc 355
>At5g66170.1 68418.m08336 senescence-associated family protein contains
similarity to ketoconazole resistant protein GI:928938
and senescence-associated protein GI:1046268 from
[Arabidopsis thaliana]
Length = 732
Score = 38.2 bits (19), Expect = 0.059
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 374 agaggtagagaagaagatg 392
|||||||||||||||||||
Sbjct: 165 agaggtagagaagaagatg 183
>At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase, putative /
CDP-diglyceride synthetase, putative similar to
CDP-diacylglycerol synthetase (CDS) GI:2181182 from
[Arabidopsis thaliana]
Length = 1618
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 111 gagaaaagaaaaaaaaaa 128
||||||||||||||||||
Sbjct: 1500 gagaaaagaaaaaaaaaa 1517
>At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase, putative /
CDP-diglyceride synthetase, putative similar to
CDP-diacylglycerol synthetase (CDS) GI:2181182 from
[Arabidopsis thaliana]
Length = 1538
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 111 gagaaaagaaaaaaaaaa 128
||||||||||||||||||
Sbjct: 1422 gagaaaagaaaaaaaaaa 1439
>At3g26010.1 68416.m03240 F-box family protein contains Pfam:PF00646 F-box domain
Length = 1416
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 109 acgagaaaagaaaaaaaa 126
||||||||||||||||||
Sbjct: 1276 acgagaaaagaaaaaaaa 1259
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,952
Number of Sequences: 29161
Number of extensions: 21952
Number of successful extensions: 2438
Number of sequences better than 10.0: 84
length of query: 431
length of database: 44,058,232
effective HSP length: 17
effective length of query: 414
effective length of database: 43,562,495
effective search space: 18034872930
effective search space used: 18034872930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)