BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226503_RAFL14_39_E18.r
         (436 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1  68417.m00425 proline-rich family protein simila...   767   0.0  
At5g38565.1  68418.m04663 F-box family protein contains F-bo...    38   0.060
At5g21160.1  68418.m02528 La domain-containing protein / pro...    38   0.060
At4g24100.1  68417.m03460 protein kinase family protein cont...    36   0.24 
At1g21890.1  68414.m02740 nodulin MtN21 family protein simil...    36   0.24 

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1 small
           nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 902

 Score =  767 bits (387), Expect = 0.0
 Identities = 431/439 (98%), Gaps = 5/439 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagataagaaacctcagattttccttttcatgactctaatggataaaatcatctaaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 902 agagataagaaacctcagattttccttttcatgactctaatggatacaatcatctaacac 843

                                                                       
Query: 61  ataaaactcatttcaaatacgttagttctaaacctcttcataaaaattggagtagaaaag 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ataaaactcatttcacatacgttagttctaaacctcttcataaaaattggagtagaaaag 783

                                                                       
Query: 121 gtaggatattgtgttaaacaagagctctgagaattttttggcaggagaaaaatgattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gtaggatattgtgttaaacaagagctctgagaattttttggcaggagaaaaatgattcat 723

                                                                       
Query: 181 tcagacctactaactctactcattgctttcaggagattcagcacctgggattcggattgt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 722 tcagacctactaactctactcattgctttcaggagattcagca-ctgggattcggattgt 664

                                                                       
Query: 241 tgaggtttggattgttgaaattaccacttggctggagcagctggatttgtatgataagga 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 663 tgaggtttggattgttgaaattaccacttgg-tggagcagctggatttgtatgataagga 605

                                                                       
Query: 301 ggaggaggaggtagtccattataattgggaggtggtccgccaccttgacctggtatggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggaggaggaggtagtccattataattgggaggtggtccgccaccttgacctggtatggga 545

                                                                       
Query: 361 gccattcctggtggtccg-cacc-tgacctggtatgggagccatt-ctggtggcctcaga 417
           |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 544 gccattcctggtggtccgccaccttgacctggtatgggagccattcctggtggcctcaga 485

                              
Query: 418 ataccattttgtggaggtg 436
           |||||||||||||||||||
Sbjct: 484 ataccattttgtggaggtg 466



>At5g38565.1 68418.m04663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 1248

 Score = 38.2 bits (19), Expect = 0.060
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 290 tatgataaggaggaggagg 308
           |||||||||||||||||||
Sbjct: 184 tatgataaggaggaggagg 202



>At5g21160.1 68418.m02528 La domain-containing protein / proline-rich family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965, PF05383: La domain
          Length = 3142

 Score = 38.2 bits (19), Expect = 0.060
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 293 gataaggaggaggaggagg 311
           |||||||||||||||||||
Sbjct: 590 gataaggaggaggaggagg 572



>At4g24100.1 68417.m03460 protein kinase family protein contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 2782

 Score = 36.2 bits (18), Expect = 0.24
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 298 ggaggaggaggaggtagt 315
           ||||||||||||||||||
Sbjct: 154 ggaggaggaggaggtagt 171



>At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 1475

 Score = 36.2 bits (18), Expect = 0.24
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 298 ggaggaggaggaggtagt 315
           ||||||||||||||||||
Sbjct: 580 ggaggaggaggaggtagt 597



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,452
Number of Sequences: 29161
Number of extensions: 16452
Number of successful extensions: 2364
Number of sequences better than 10.0: 86
length of query: 436
length of database: 44,058,232
effective HSP length: 17
effective length of query: 419
effective length of database: 43,562,495
effective search space: 18252685405
effective search space used: 18252685405
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)