BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226453_RAFL14_35_A17.r
(412 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-... 769 0.0
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-... 708 0.0
At1g76880.1 68414.m08946 trihelix DNA-binding protein, puta... 131 5e-30
At1g33240.1 68414.m04108 trihelix DNA-binding protein, puta... 50 1e-05
At5g28300.1 68418.m03436 trihelix DNA-binding protein, puta... 38 0.056
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor (GT2)
identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 1686
Score = 769 bits (388), Expect = 0.0
Identities = 408/412 (99%), Gaps = 2/412 (0%)
Strand = Plus / Plus
Query: 1 aattatgagtttattgattgatacatgaattaggaaaatgatggagcttggttacaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattatgagtttattgattgatacatgaattaggaaaatgatggagcttggttacaagag 60
Query: 61 aagttcaaagaaatgcaaggagaagttcgagaacctgtacaagtaccacaaacgtaccaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 aagttcaaagaaatgcaaggagaagttcgagaacgtgtacaagtaccacaaacgtaccaa 120
Query: 121 agaaggtcgtaccgggaaatccgaaggcaaaacttaccggtttttcgaagagttagaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaaggtcgtaccgggaaatccgaaggcaaaacttaccggtttttcgaagagttagaagc 180
Query: 181 tttcgagactctcagttcctatcaacctgaacctgagtcgcaacccgcgaaatcttctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcgagactctcagttcctatcaacctgaacctgagtcgcaacccgcgaaatcttctgc 240
Query: 241 agtgatcacgaacgcgcccgccaacctcttccttgataccatggattagctctagcaatc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtgatcacgaacgcgcccg-caacctcttccttgataccatggattagctctagcaatc 299
Query: 301 catcaaccgaaaaaaagttcttcaccgttgaaacatcatcatcaggttagtgtacaaccc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catcaaccg-aaaaaagttcttcaccgttgaaacatcatcatcaggttagtgtacaaccc 358
Query: 361 atcaccacaaaccctaccttcttcgccaagcaaccatcttccacgacgcctt 412
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 359 atcaccacaaaccctaccttcctcgccaagcaaccatcttccacgacgcctt 410
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor (GT2)
identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 1966
Score = 708 bits (357), Expect = 0.0
Identities = 377/381 (98%), Gaps = 2/381 (0%)
Strand = Plus / Plus
Query: 32 aggaaaatgatggagcttggttacaagagaagttcaaagaaatgcaaggagaagttcgag 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggaaaatgatggagcttggttacaagagaagttcaaagaaatgcaaggagaagttcgag 371
Query: 92 aacctgtacaagtaccacaaacgtaccaaagaaggtcgtaccgggaaatccgaaggcaaa 151
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aacgtgtacaagtaccacaaacgtaccaaagaaggtcgtaccgggaaatccgaaggcaaa 431
Query: 152 acttaccggtttttcgaagagttagaagctttcgagactctcagttcctatcaacctgaa 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acttaccggtttttcgaagagttagaagctttcgagactctcagttcctatcaacctgaa 491
Query: 212 cctgagtcgcaacccgcgaaatcttctgcagtgatcacgaacgcgcccgccaacctcttc 271
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 492 cctgagtcgcaacccgcgaaatcttctgcagtgatcacgaacgcgcccg-caacctcttc 550
Query: 272 cttgataccatggattagctctagcaatccatcaaccgaaaaaaagttcttcaccgttga 331
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 cttgataccatggattagctctagcaatccatcaaccg-aaaaaagttcttcaccgttga 609
Query: 332 aacatcatcatcaggttagtgtacaacccatcaccacaaaccctaccttcttcgccaagc 391
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 610 aacatcatcatcaggttagtgtacaacccatcaccacaaaccctaccttcctcgccaagc 669
Query: 392 aaccatcttccacgacgcctt 412
|||||||||||||||||||||
Sbjct: 670 aaccatcttccacgacgcctt 690
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative similar to
DNA-binding protein DF1 [Pisum sativum] GI:13646986
Length = 2106
Score = 131 bits (66), Expect = 5e-30
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 31 taggaaaatgatggagcttggttacaagagaagttcaaagaaatgcaaggagaagttcga 90
|||||||||| ||||| |||||||| |||| ||||||||||||| ||||| |||||
Sbjct: 285 taggaaaatggcggagcatggttacataagaaacgcaaagaaatgcaaagagaaattcga 344
Query: 91 gaacctgtacaagtaccacaaacgtaccaaagaaggtcgtaccgggaaatccgaaggcaa 150
|||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 345 gaacgtttacaaataccacaaacgaaccaaagaaggtcgtaccggaaaatccgaaggcaa 404
Query: 151 aactta 156
||||||
Sbjct: 405 aactta 410
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative similar to GTL1
[Arabidopsis thaliana] GI:2664198
Length = 2624
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 50 ggttacaagagaagttcaaagaaatgcaaggagaagttcga 90
|||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 533 ggttacaaacgaagttcaaagaaatgcaaagagaaattcga 573
>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative similar to GT-2
factor [Arabidopsis thaliana GI:416490
Length = 2180
Score = 38.2 bits (19), Expect = 0.056
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 34 gaaaatgatggagcttggttacaagagaagt 64
||||||| ||||| |||| ||||||||||||
Sbjct: 1694 gaaaatgttggagattgggtacaagagaagt 1724
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,184
Number of Sequences: 29161
Number of extensions: 16184
Number of successful extensions: 1142
Number of sequences better than 10.0: 26
length of query: 412
length of database: 44,058,232
effective HSP length: 17
effective length of query: 395
effective length of database: 43,562,495
effective search space: 17207185525
effective search space used: 17207185525
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)