BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rpl36.F
(114 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00760 rpl36#ribosomal protein L36 226 3e-59
At5g58000.1 68418.m07256 phosphatase-related weak similarit... 32 0.86
At5g24460.1 68418.m02883 expressed protein 32 0.86
At5g15140.1 68418.m01774 aldose 1-epimerase family protein ... 32 0.86
At4g30210.2 68417.m04297 NADPH-cytochrome p450 reductase, p... 32 0.86
>AtCg00760 rpl36#ribosomal protein L36
Length = 114
Score = 226 bits (114), Expect = 3e-59
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 atgaaaataagggcttccgttcgtaaaatttgtgaaaagtgtcgactaatccgcaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaaataagggcttccgttcgtaaaatttgtgaaaagtgtcgactaatccgcaggagg 60
Query: 61 ggacgaattatagtaatttgttccaacccgaggcataaacaaagacaaggataa 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacgaattatagtaatttgttccaacccgaggcataaacaaagacaaggataa 114
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533: BRCA1
C Terminus (BRCT) domain, PF03031: NLI interacting factor
Length = 3239
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 16 tccgttcgtaaaattt 31
||||||||||||||||
Sbjct: 1071 tccgttcgtaaaattt 1086
>At5g24460.1 68418.m02883 expressed protein
Length = 1176
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 taaaatttgtgaaaag 39
||||||||||||||||
Sbjct: 1054 taaaatttgtgaaaag 1039
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar to SP|P05149
Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)
from Acinetobacter calcoaceticus; contains Pfam profile
PF01263 Aldose 1-epimerase
Length = 1473
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 97 aaacaaagacaaggat 112
||||||||||||||||
Sbjct: 261 aaacaaagacaaggat 276
>At4g30210.2 68417.m04297 NADPH-cytochrome p450 reductase, putative /
NADPH-ferrihemoprotein reductase, putative similar to
NADPH-cytochrome P450 oxydoreductase from [Populus
balsamifera subsp. trichocarpa x Populus deltoides]
GI:13183564, GI:13183566
Length = 2615
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 90 gaggcataaacaaaga 105
||||||||||||||||
Sbjct: 2615 gaggcataaacaaaga 2600
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2242
Number of Sequences: 29161
Number of extensions: 2242
Number of successful extensions: 626
Number of sequences better than 10.0: 12
length of query: 114
length of database: 44,058,232
effective HSP length: 16
effective length of query: 98
effective length of database: 43,591,656
effective search space: 4271982288
effective search space used: 4271982288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)