BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psbT.F
(102 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00690 psbT#PSII T protein 202 4e-52
At5g22410.1 68418.m02614 peroxidase, putative identical to ... 32 0.75
At4g19380.1 68417.m02853 alcohol oxidase-related similar to... 32 0.75
At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase fami... 32 0.75
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrola... 32 0.75
>AtCg00690 psbT#PSII T protein
Length = 102
Score = 202 bits (102), Expect = 4e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 atggaagcattggtttatacatttctcttagtatccactttagggataatttttttcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaagcattggtttatacatttctcttagtatccactttagggataatttttttcgct 60
Query: 61 attttttttcgggaaccacctaaaatttcaactaaaaaatga 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attttttttcgggaaccacctaaaatttcaactaaaaaatga 102
>At5g22410.1 68418.m02614 peroxidase, putative identical to peroxidase ATP14a
[Arabidopsis thaliana] gi|1546690|emb|CAA67335
Length = 1260
Score = 32.2 bits (16), Expect = 0.75
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 aaatttcaactaaaaa 98
||||||||||||||||
Sbjct: 8 aaatttcaactaaaaa 23
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long chain fatty
alcohol oxidase from Candida cloacae [GI:6983581],
Candida tropicalis [GI:6983594]
Length = 2367
Score = 32.2 bits (16), Expect = 0.75
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 25 ctcttagtatccactt 40
||||||||||||||||
Sbjct: 308 ctcttagtatccactt 293
>At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family protein low
similarity to PhaB [Pseudomonas putida] GI:3253198,
SP|P31551 Carnitine racemase {Escherichia coli};
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 1009
Score = 32.2 bits (16), Expect = 0.75
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 taaaatttcaactaaa 96
||||||||||||||||
Sbjct: 964 taaaatttcaactaaa 949
>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family protein
similar to Potential phospholipid-transporting ATPase (EC
3.6.3.1) from Homo sapiens [SP|O43520], Mus musculus
[SP|P70704]; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 3959
Score = 32.2 bits (16), Expect = 0.75
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3 ggaagcattggtttat 18
||||||||||||||||
Sbjct: 3241 ggaagcattggtttat 3256
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2503
Number of Sequences: 29161
Number of extensions: 2503
Number of successful extensions: 646
Number of sequences better than 10.0: 13
length of query: 102
length of database: 44,058,232
effective HSP length: 16
effective length of query: 86
effective length of database: 43,591,656
effective search space: 3748882416
effective search space used: 3748882416
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)