BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= petG.F
(114 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00600 petG#cytochrome b6-f complex, subunit V 226 3e-59
At5g52030.1 68418.m06457 TraB protein-related 36 0.055
At5g52030.2 68418.m06456 TraB protein-related 36 0.055
At5g07250.1 68418.m00827 rhomboid family protein contains P... 32 0.86
At5g07240.1 68418.m00826 calmodulin-binding family protein ... 32 0.86
>AtCg00600 petG#cytochrome b6-f complex, subunit V
Length = 114
Score = 226 bits (114), Expect = 3e-59
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 atgattgaagtttttttatttggaatcgtcttaggtctaattcctattactttggctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattgaagtttttttatttggaatcgtcttaggtctaattcctattactttggctgga 60
Query: 61 ttattcgtaactgcttatttacaatacagacgtggtgatcagttggacttttaa 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattcgtaactgcttatttacaatacagacgtggtgatcagttggacttttaa 114
>At5g52030.1 68418.m06457 TraB protein-related
Length = 1396
Score = 36.2 bits (18), Expect = 0.055
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3 gattgaagtttttttatt 20
||||||||||||||||||
Sbjct: 103 gattgaagtttttttatt 86
>At5g52030.2 68418.m06456 TraB protein-related
Length = 1427
Score = 36.2 bits (18), Expect = 0.055
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3 gattgaagtttttttatt 20
||||||||||||||||||
Sbjct: 103 gattgaagtttttttatt 86
>At5g07250.1 68418.m00827 rhomboid family protein contains PFAM domain PF01694,
Rhomboid family
Length = 1979
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 attgaagtttttttat 19
||||||||||||||||
Sbjct: 1329 attgaagtttttttat 1344
>At5g07240.1 68418.m00826 calmodulin-binding family protein contains Pfam profile
PF00612: IQ calmodulin-binding motif
Length = 1551
Score = 32.2 bits (16), Expect = 0.86
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4 attgaagtttttttat 19
||||||||||||||||
Sbjct: 1468 attgaagtttttttat 1453
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2451
Number of Sequences: 29161
Number of extensions: 2451
Number of successful extensions: 641
Number of sequences better than 10.0: 16
length of query: 114
length of database: 44,058,232
effective HSP length: 16
effective length of query: 98
effective length of database: 43,591,656
effective search space: 4271982288
effective search space used: 4271982288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)