BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ORF31.F
(96 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00590 orf31#hypothetical protein 190 1e-48
At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP... 30 2.8
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) i... 30 2.8
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane ... 30 2.8
At4g32000.1 68417.m04556 protein kinase family protein cont... 30 2.8
>AtCg00590 orf31#hypothetical protein
Length = 96
Score = 190 bits (96), Expect = 1e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 atgcctactataactagttatttcggttttctactagcagctttaactataacctcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcctactataactagttatttcggttttctactagcagctttaactataacctcagtt 60
Query: 61 ctgtttattggtctaagcaaaatacgacttatttga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtttattggtctaagcaaaatacgacttatttga 96
>At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1) identical to
sugar-porter family protein 1 [Arabidopsis thaliana]
GI:14585699
Length = 1966
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 17 gttatttcggttttctact 35
||||||| |||||||||||
Sbjct: 112 gttattttggttttctact 94
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical to CLC-d
chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 2861
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 agcaaaatacgactt 90
|||||||||||||||
Sbjct: 455 agcaaaatacgactt 441
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein kinase,
putative
Length = 2564
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 15 tagttatttcggttttcta 33
||||| |||||||||||||
Sbjct: 2465 tagttttttcggttttcta 2483
>At4g32000.1 68417.m04556 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 1257
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 gtttattggtctaag 77
|||||||||||||||
Sbjct: 262 gtttattggtctaag 276
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1602
Number of Sequences: 29161
Number of extensions: 1602
Number of successful extensions: 421
Number of sequences better than 10.0: 11
length of query: 96
length of database: 44,058,232
effective HSP length: 16
effective length of query: 80
effective length of database: 43,591,656
effective search space: 3487332480
effective search space used: 3487332480
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)