BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psbM.F
(105 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00220 psbM#PSII low MW protein 208 6e-54
At4g29150.1 68417.m04171 calmodulin-binding family protein ... 34 0.20
At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family ... 30 3.1
At5g13990.1 68418.m01636 exocyst subunit EXO70 family prote... 30 3.1
At3g46510.1 68416.m05049 armadillo/beta-catenin repeat fami... 30 3.1
>AtCg00220 psbM#PSII low MW protein
Length = 105
Score = 208 bits (105), Expect = 6e-54
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 atggaagtaaatattcttgcatttattgctactgcactcttcattctcgttcctactgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaagtaaatattcttgcatttattgctactgcactcttcattctcgttcctactgct 60
Query: 61 tttttgcttataatttacgtaaaaaccgttagtcaaaatgattaa 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttttgcttataatttacgtaaaaaccgttagtcaaaatgattaa 105
>At4g29150.1 68417.m04171 calmodulin-binding family protein contains Pfam
profile PF00612: IQ calmodulin-binding motif
Length = 1369
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26 ttgctactgcactcttc 42
|||||||||||||||||
Sbjct: 852 ttgctactgcactcttc 836
>At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family protein low
similarity to hydrolase [Terrabacter sp. DBF63]
GI:14196240; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 1317
Score = 30.2 bits (15), Expect = 3.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 attgctactgcactcttca 43
|||||| ||||||||||||
Sbjct: 704 attgcttctgcactcttca 722
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein contains Pfam
domain PF03081: Exo70 exocyst complex subunit;
Length = 2325
Score = 30.2 bits (15), Expect = 3.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 67 cttataatttacgtaaaaa 85
||||| |||||||||||||
Sbjct: 120 cttattatttacgtaaaaa 102
>At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family protein / U-box
domain-containing family protein contains Pfam domain,
PF00514: Armadillo/beta-catenin-like repeats and Pfam,
PF04564: U-box domain
Length = 2489
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 tgctactgcactctt 41
|||||||||||||||
Sbjct: 1627 tgctactgcactctt 1641
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2473
Number of Sequences: 29161
Number of extensions: 2473
Number of successful extensions: 645
Number of sequences better than 10.0: 13
length of query: 105
length of database: 44,058,232
effective HSP length: 16
effective length of query: 89
effective length of database: 43,591,656
effective search space: 3879657384
effective search space used: 3879657384
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)