BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psbI.F
(111 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00080 psbI#PSII I protein 220 2e-57
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chlo... 34 0.21
At4g34340.1 68417.m04880 expressed protein 34 0.21
At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydr... 34 0.21
At3g27650.1 68416.m03453 LOB domain protein 25 / lateral or... 34 0.21
>AtCg00080 psbI#PSII I protein
Length = 111
Score = 220 bits (111), Expect = 2e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 atgcttactctcaaactttttgtatacactgtagttatattctttgtttctctcttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcttactctcaaactttttgtatacactgtagttatattctttgtttctctcttcata 60
Query: 61 tttggattcctatctaatgatccaggacgtaatccgggacgtgaagaataa 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttggattcctatctaatgatccaggacgtaatccgggacgtgaagaataa 111
>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1)
(THI4) identical to SP|Q38814 Thiazole biosynthetic
enzyme, chloroplast precursor (ARA6) {Arabidopsis
thaliana}
Length = 1530
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 41 tctttgtttctctcttc 57
|||||||||||||||||
Sbjct: 1197 tctttgtttctctcttc 1213
>At4g34340.1 68417.m04880 expressed protein
Length = 1372
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 47 tttctctcttcatattt 63
|||||||||||||||||
Sbjct: 18 tttctctcttcatattt 34
>At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase, putative
similar to SP|P34047 Imidazoleglycerol-phosphate
dehydratase 1 (EC 4.2.1.19) (IGPD 1) {Arabidopsis
thaliana}; contains Pfam profile PF00475:
imidazoleglycerol-phosphate dehydratase
Length = 1112
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 ctttgtttctctcttca 58
|||||||||||||||||
Sbjct: 264 ctttgtttctctcttca 248
>At3g27650.1 68416.m03453 LOB domain protein 25 / lateral organ boundaries
domain protein 25 (LBD25) identical to LOB DOMAIN 25
[Arabidopsis thaliana] GI:17227166
Length = 930
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 40 ttctttgtttctctctt 56
|||||||||||||||||
Sbjct: 208 ttctttgtttctctctt 192
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4247
Number of Sequences: 29161
Number of extensions: 4247
Number of successful extensions: 1202
Number of sequences better than 10.0: 34
length of query: 111
length of database: 44,058,232
effective HSP length: 16
effective length of query: 95
effective length of database: 43,591,656
effective search space: 4141207320
effective search space used: 4141207320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)