BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At5g53410.F
         (108 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_200153.1|  hypothetical protein [Arabidopsis thaliana...    72   3e-12
ref|NP_200021.1|  expressed protein [Arabidopsis thaliana]|g...    69   4e-11
ref|NP_180323.1|  expressed protein [Arabidopsis thaliana]|g...    66   2e-10
ref|NP_179423.1|  hypothetical protein [Arabidopsis thaliana...    60   2e-08
ref|NP_851152.1|  cytochrome P450 family protein [Arabidopsi...    50   2e-05
ref|ZP_00046210.1|  hypothetical protein [Lactobacillus gass...    31   6.6  
ref|NP_964758.1|  hypothetical protein LJ0903 [Lactobacillus...    31   6.6  

>ref|NP_200153.1| hypothetical protein [Arabidopsis
           thaliana]|gi|8843770|dbj|BAA97318.1| unnamed protein
           product [Arabidopsis thaliana]
          Length = 35

 Score = 72.0 bits (175), Expect = 3e-12
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL 105
           MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL
Sbjct: 1   MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL 35



>ref|NP_200021.1| expressed protein [Arabidopsis
           thaliana]|gi|10177743|dbj|BAB11056.1| unnamed protein
           product [Arabidopsis thaliana]
          Length = 35

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 32/35 (91%), Positives = 34/35 (96%)
 Frame = +1

Query: 1   MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL 105
           M LLAIDLDMFGHGSAGQ+LGR+DVDRVEYVRIGL
Sbjct: 1   MALLAIDLDMFGHGSAGQVLGRTDVDRVEYVRIGL 35



>ref|NP_180323.1| expressed protein [Arabidopsis thaliana]|gi|25407905|pir||B84674
           hypothetical protein At2g27540 [imported] - Arabidopsis
           thaliana|gi|3860276|gb|AAC73044.1| unknown protein
           [Arabidopsis thaliana]|gi|20197667|gb|AAM15192.1|
           unknown protein [Arabidopsis thaliana]
          Length = 35

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 31/35 (88%), Positives = 33/35 (93%)
 Frame = +1

Query: 1   MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL 105
           M LLAIDLDMFGHG AGQ+LGR+DVDRVEYVRIGL
Sbjct: 1   MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL 35



>ref|NP_179423.1| hypothetical protein [Arabidopsis
          thaliana]|gi|25411857|pir||H84562 hypothetical protein
          At2g18320 [imported] - Arabidopsis
          thaliana|gi|4309735|gb|AAD15505.1| unknown protein
          [Arabidopsis thaliana]
          Length = 106

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +1

Query: 1  MTLLAIDLDMFGHGSAGQILGRSDVDRVEY 90
          M LLAIDLDMFGHGSAGQ+LGR+DVDRVEY
Sbjct: 1  MALLAIDLDMFGHGSAGQVLGRTDVDRVEY 30



>ref|NP_851152.1| cytochrome P450 family protein [Arabidopsis
           thaliana]|gi|10177751|dbj|BAB11064.1| cytochrome
           P450-like protein [Arabidopsis thaliana]
          Length = 518

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = +2

Query: 38  MDRRDKYWAGPMWIGLSMYGSGS 106
           MDRR KYWAGPMWIGLSM GSGS
Sbjct: 1   MDRRGKYWAGPMWIGLSMCGSGS 23



>ref|ZP_00046210.1| hypothetical protein [Lactobacillus gasseri]
          Length = 171

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 29  CLGMDRRDKYWAGPMWIGLSMYG 97
           CLG+DR  K W GP++I L + G
Sbjct: 98  CLGLDRLFKKWCGPLFIWLGIIG 120



>ref|NP_964758.1| hypothetical protein LJ0903 [Lactobacillus johnsonii NCC
           533]|gi|41583114|gb|AAS08724.1| hypothetical protein
           LJ0903 [Lactobacillus johnsonii NCC 533]
          Length = 171

 Score = 31.2 bits (69), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 29  CLGMDRRDKYWAGPMWIGLSMYG 97
           CLG+DR  K W GP++I L + G
Sbjct: 98  CLGLDRLFKKWCGPLFIWLGIIG 120



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 11
effective length of database: 608,864,640
effective search space used: 14612751360
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)