BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At3g42090.F
         (114 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189795.1|  hypothetical protein [Arabidopsis thaliana...    72   4e-12
ref|NP_198113.1|  myb family transcription factor [Arabidops...    43   0.002
ref|NP_187189.1|  myb family transcription factor [Arabidops...    37   0.092
gb|AAL86288.1|  unknown protein [Arabidopsis thaliana]             37   0.092

>ref|NP_189795.1| hypothetical protein [Arabidopsis thaliana]|gi|11357785|pir||T48964
           hypothetical protein F4M19.50 - Arabidopsis
           thaliana|gi|7801659|emb|CAB91580.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 37

 Score = 71.6 bits (174), Expect = 4e-12
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   MEPKMIEIVTDSKSIAQAMVDAAMKQEEEMVISSNAR 111
           MEPKMIEIVTDSKSIAQAMVDAAMKQEEEMVISSNAR
Sbjct: 1   MEPKMIEIVTDSKSIAQAMVDAAMKQEEEMVISSNAR 37



>ref|NP_198113.1| myb family transcription factor [Arabidopsis thaliana]
          Length = 969

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   MEPKMIEIVTDSKSIAQAMVDAAMK 75
           MEP+MIEIV +SKSIAQAMVDAA+K
Sbjct: 800 MEPEMIEIVIESKSIAQAMVDAAIK 824



>ref|NP_187189.1| myb family transcription factor [Arabidopsis
           thaliana]|gi|7596773|gb|AAF64544.1| unknown protein
           [Arabidopsis thaliana]
          Length = 1055

 Score = 37.4 bits (85), Expect = 0.092
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   MEPKMIEIVTDSKSIAQAMVDAAMK 75
           MEP+M+EIV  SK+ AQAMVDAA+K
Sbjct: 886 MEPEMLEIVKGSKTRAQAMVDAAIK 910



>gb|AAL86288.1| unknown protein [Arabidopsis thaliana]
          Length = 820

 Score = 37.4 bits (85), Expect = 0.092
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   MEPKMIEIVTDSKSIAQAMVDAAMK 75
           MEP+M+EIV  SK+ AQAMVDAA+K
Sbjct: 651 MEPEMLEIVKGSKTRAQAMVDAAIK 675



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 13
effective length of database: 605,074,044
effective search space used: 14521777056
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)