BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g47660.F
         (108 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_182288.1|  hypothetical protein [Arabidopsis thaliana...    52   3e-06

>ref|NP_182288.1| hypothetical protein [Arabidopsis thaliana]|gi|7487573|pir||T00418
           hypothetical protein At2g47660 [imported] - Arabidopsis
           thaliana|gi|3738280|gb|AAC63622.1| hypothetical protein
           [Arabidopsis thaliana]|gi|20196962|gb|AAM14845.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 35

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 27/35 (77%), Positives = 27/35 (77%)
 Frame = +1

Query: 1   MTKMKTIXXXXXXXXARTSEKGLGREATLIHILPL 105
           MTKMKTI        ARTSEKGLGREATLIHILPL
Sbjct: 1   MTKMKTIEEEEEEEEARTSEKGLGREATLIHILPL 35



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 11
effective length of database: 608,864,640
effective search space used: 14612751360
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)