BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g27540.F
(108 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180323.1| expressed protein [Arabidopsis thaliana]|g... 72 3e-12
ref|NP_200021.1| expressed protein [Arabidopsis thaliana]|g... 70 2e-11
ref|NP_200153.1| hypothetical protein [Arabidopsis thaliana... 66 2e-10
ref|NP_179423.1| hypothetical protein [Arabidopsis thaliana... 61 8e-09
ref|NP_851152.1| cytochrome P450 family protein [Arabidopsi... 48 5e-05
>ref|NP_180323.1| expressed protein [Arabidopsis thaliana]|gi|25407905|pir||B84674
hypothetical protein At2g27540 [imported] - Arabidopsis
thaliana|gi|3860276|gb|AAC73044.1| unknown protein
[Arabidopsis thaliana]|gi|20197667|gb|AAM15192.1|
unknown protein [Arabidopsis thaliana]
Length = 35
Score = 72.0 bits (175), Expect = 3e-12
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +1
Query: 1 MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL 105
MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL
Sbjct: 1 MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL 35
>ref|NP_200021.1| expressed protein [Arabidopsis
thaliana]|gi|10177743|dbj|BAB11056.1| unnamed protein
product [Arabidopsis thaliana]
Length = 35
Score = 69.7 bits (169), Expect = 2e-11
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +1
Query: 1 MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL 105
MALLAIDLDMFGHG AGQVLGRTDVDRVEYVRIGL
Sbjct: 1 MALLAIDLDMFGHGSAGQVLGRTDVDRVEYVRIGL 35
>ref|NP_200153.1| hypothetical protein [Arabidopsis
thaliana]|gi|8843770|dbj|BAA97318.1| unnamed protein
product [Arabidopsis thaliana]
Length = 35
Score = 66.2 bits (160), Expect = 2e-10
Identities = 31/35 (88%), Positives = 33/35 (93%)
Frame = +1
Query: 1 MALLAIDLDMFGHGLAGQVLGRTDVDRVEYVRIGL 105
M LLAIDLDMFGHG AGQ+LGR+DVDRVEYVRIGL
Sbjct: 1 MTLLAIDLDMFGHGSAGQILGRSDVDRVEYVRIGL 35
>ref|NP_179423.1| hypothetical protein [Arabidopsis
thaliana]|gi|25411857|pir||H84562 hypothetical protein
At2g18320 [imported] - Arabidopsis
thaliana|gi|4309735|gb|AAD15505.1| unknown protein
[Arabidopsis thaliana]
Length = 106
Score = 60.8 bits (146), Expect = 8e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 1 MALLAIDLDMFGHGLAGQVLGRTDVDRVEY 90
MALLAIDLDMFGHG AGQVLGRTDVDRVEY
Sbjct: 1 MALLAIDLDMFGHGSAGQVLGRTDVDRVEY 30
>ref|NP_851152.1| cytochrome P450 family protein [Arabidopsis
thaliana]|gi|10177751|dbj|BAB11064.1| cytochrome
P450-like protein [Arabidopsis thaliana]
Length = 518
Score = 48.1 bits (113), Expect = 5e-05
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 38 MDWRAKYWAGPMWIGLSMCESGS 106
MD R KYWAGPMWIGLSMC SGS
Sbjct: 1 MDRRGKYWAGPMWIGLSMCGSGS 23
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 11
effective length of database: 608,864,640
effective search space used: 14612751360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)