BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g05270.F
         (105 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178597.1|  expressed protein [Arabidopsis thaliana]|g...    47   2e-04

>ref|NP_178597.1| expressed protein [Arabidopsis thaliana]|gi|25411154|pir||F84466
          hypothetical protein At2g05270 [imported] - Arabidopsis
          thaliana|gi|4755197|gb|AAD29064.1| unknown protein
          [Arabidopsis thaliana]|gi|46931200|gb|AAT06404.1|
          At2g05270 [Arabidopsis thaliana]
          Length = 34

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 1  MMIYTGRSQQMQKLDALRSCP 63
          MMIYTGRSQQMQKLDALRSCP
Sbjct: 1  MMIYTGRSQQMQKLDALRSCP 21



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 10
effective length of database: 610,759,938
effective search space used: 14658238512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)