BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.28.C1
(910 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR1... 1754 0.0
At4g04630.1 68417.m00677 expressed protein contains Pfam pr... 36 0.50
At1g62150.1 68414.m07011 mitochondrial transcription termin... 36 0.50
At1g55390.1 68414.m06335 DC1 domain-containing protein simi... 36 0.50
At5g65960.1 68418.m08303 expressed protein 34 2.0
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) similar to
histone H3 GB:X17141 GI:10795 from Tetrahymena
pyriformis, GI:161790 from Tetrahymena thermophila;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 909
Score = 1754 bits (885), Expect = 0.0
Identities = 903/909 (99%)
Strand = Plus / Plus
Query: 2 aaattgtgaagcagattcgattttaaaatcaaaatttgagggtcgagcgggaaagtaaaa 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 aaattgtgaagcagattcgattttaaaatcaaaatttgagtgtcgagcgggaaagtaaaa 60
Query: 62 gttccccttcaatcttctaatcttttcgtatctagcgggaaatttctcagcagtaaaaat 121
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttccgctccaatcttctaatcttttcgtatctagcgggaaatttctcagcagtaaaaat 120
Query: 122 caatggcgagaaccaagcatcgcgttaccaggtcacaacctcggaatcaaactgatgccg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatggcgagaaccaagcatcgcgttaccaggtcacaacctcggaatcaaactgatgccg 180
Query: 182 ccgctgcttcatcttctcaggcggcaggtccaactacgaccccgacaaggagaggcggtg 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccggtgcttcatcttctcaggcggcaggtccaactacgaccccgacaaggagaggcggtg 240
Query: 242 aaggtggagataatactcaacaaacaaatcctacaacttcaccagctactggtacaagga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaggtggagataatactcaacaaacaaatcctacaacttcaccagctactggtacaagga 300
Query: 302 gaggggctaagagatccagacaggctatgccacgaggctcacagaagaagtcttatcgat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaggggctaagagatccagacaggctatgccacgaggctcacagaagaagtcttatcgat 360
Query: 362 acaggccaggaaccgttgctctaaaagagattcgccatttccagaagcagacaaaccttc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaggccaggaaccgttgctctaaaagagattcgccatttccagaagcagacaaaccttc 420
Query: 422 ttattccggctgccagtttcataagagaagtgagaagtataacccatatgttggcccctc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttattccggctgccagtttcataagagaagtgagaagtataacccatatgttggcccctc 480
Query: 482 cccaaatcaatcgttggacagctgaagctcttgttgctcttcaagaggcggcagaagatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cccaaatcaatcgttggacagctgaagctcttgttgctcttcaagaggcggcagaagatt 540
Query: 542 acttggttggtttgttctcagattcaatgctctgtgctatccatgcaagacgtgttactc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acttggttggtttgttctcagattcaatgctctgtgctatccatgcaagacgtgttactc 600
Query: 602 taatgagaaaagactttgaacttgcacgccggcttggaggaaaaggcagaccatggtgat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taatgagaaaagactttgaacttgcacgccggcttggaggaaaaggcagaccatggtgat 660
Query: 662 agaaaactcactcactattcacatctcttacattgtaagtgaggatcgaatagttcacaa 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 661 agaaaactcactcactattcacatctcttacattgtaagtgaggatcgaatagttaacaa 720
Query: 722 caagtgtgtcgtaggttgtataaggttattctctccttgtctcttggtgatgcatgtcct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caagtgtgtcgtaggttgtataaggttattctctccttgtctcttggtgatgcatgtcct 780
Query: 782 tttattttactaaatgatctgaccaaaaccttcttttgaaacatacctggaaacccgaat 841
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 781 tttattttactaaatgatctgaccaaaaccttcttttgaaacataactggaaacccgaat 840
Query: 842 ttggtttgattccaatatctaggctgtaaaacttctttctctatgtgtgtttctatctgc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttggtttgattccaatatctaggctgtaaaacttctttctctatgtgtgtttctatctgc 900
Query: 902 ttttcgttg 910
|||||||||
Sbjct: 901 ttttcgttg 909
>At4g04630.1 68417.m00677 expressed protein contains Pfam profile PF04520:
Protein of unknown function, DUF584
Length = 1124
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 873 cttctttctctatgtgtg 890
||||||||||||||||||
Sbjct: 538 cttctttctctatgtgtg 555
>At1g62150.1 68414.m07011 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1736
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 26 aaaatcaaaatttgaggg 43
||||||||||||||||||
Sbjct: 29 aaaatcaaaatttgaggg 12
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to hypothetical
protein GI:4204272 from [Arabidopsis thaliana] contains
weak PHD zinc finger motifs contains weak PHD zinc
finger motifs DC1 domain, a divergent protein kinase C
domain of unknown function.
Length = 2168
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 891 tttctatctgcttttcgt 908
||||||||||||||||||
Sbjct: 107 tttctatctgcttttcgt 124
>At5g65960.1 68418.m08303 expressed protein
Length = 1454
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 511 cttgttgctcttcaaga 527
|||||||||||||||||
Sbjct: 339 cttgttgctcttcaaga 355
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,582
Number of Sequences: 29161
Number of extensions: 30582
Number of successful extensions: 683
Number of sequences better than 10.0: 53
length of query: 910
length of database: 44,058,232
effective HSP length: 18
effective length of query: 892
effective length of database: 43,533,334
effective search space: 38831733928
effective search space used: 38831733928
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)