BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.27.C1
(939 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01360.1 68414.m00051 expressed protein similar to hypot... 1861 0.0
At4g01026.1 68417.m00139 expressed protein 351 7e-96
At5g53160.2 68418.m06609 expressed protein similar to unkno... 78 2e-13
At5g53160.1 68418.m06608 expressed protein similar to unkno... 78 2e-13
At4g27920.1 68417.m04007 expressed protein various predicte... 62 9e-09
>At1g01360.1 68414.m00051 expressed protein similar to hypothetical protein
GB:CAB45785 GI:5262156 from [Arabidopsis thaliana]
Length = 941
Score = 1861 bits (939), Expect = 0.0
Identities = 939/939 (100%)
Strand = Plus / Plus
Query: 1 gttttggcataacgaagcatcttcttcttcttccttgtatttattatccatttccagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttttggcataacgaagcatcttcttcttcttccttgtatttattatccatttccagaga 60
Query: 61 ttctcccttgtgagataacaacgaagaacgaaagagagagagagagagagagatatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttctcccttgtgagataacaacgaagaacgaaagagagagagagagagagagatatgatg 120
Query: 121 gacggcgttgaaggcggcacggcgatgtacggtggtctcgagacggtgcaatacgtacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacggcgttgaaggcggcacggcgatgtacggtggtctcgagacggtgcaatacgtacgg 180
Query: 181 acgcatcatcaacatctgtgcagagaaaaccagtgtacctctgctcttgtcaaacacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acgcatcatcaacatctgtgcagagaaaaccagtgtacctctgctcttgtcaaacacatc 240
Query: 241 aaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcagaaatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcagaaatac 300
Query: 301 aaaccgtttgtgagcagatgtacagtaatcggtgatcctgaaatcggcagtcttagagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaccgtttgtgagcagatgtacagtaatcggtgatcctgaaatcggcagtcttagagaa 360
Query: 361 gtcaatgttaaatctggtcttcctgcaacaacatctactgagagattagaacttcttgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaatgttaaatctggtcttcctgcaacaacatctactgagagattagaacttcttgat 420
Query: 421 gatgaagaacacatcctcggtatcaaaatcatcggtggtgatcacagacttaagaattac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgaagaacacatcctcggtatcaaaatcatcggtggtgatcacagacttaagaattac 480
Query: 481 tcgtcgattttgacggttcatccggagataatcgagggaagagcaggaacgatggtgatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcgtcgattttgacggttcatccggagataatcgagggaagagcaggaacgatggtgatt 540
Query: 541 gaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctactttgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctactttgtt 600
Query: 601 gaagcacttatcagatgtaatctcaagtcactagcagatgtttctgaaagattggcttct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaagcacttatcagatgtaatctcaagtcactagcagatgtttctgaaagattggcttct 660
Query: 661 caggacattactcagtgaactacataatcaatgaacaagggcattgaagtgaagtatcaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caggacattactcagtgaactacataatcaatgaacaagggcattgaagtgaagtatcaa 720
Query: 721 ttccagtttgtgatataatcaatattcttcaggatttttttggtttggcctagatatata 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttccagtttgtgatataatcaatattcttcaggatttttttggtttggcctagatatata 780
Query: 781 tatagatatctatcctcggtaatgaccagtctaaaaagatgtacatattgtcccaatggt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tatagatatctatcctcggtaatgaccagtctaaaaagatgtacatattgtcccaatggt 840
Query: 841 gaagttttgatgtaagatatctcctggtggtttgttatttgtagatatttttgtaaacaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaagttttgatgtaagatatctcctggtggtttgttatttgtagatatttttgtaaacaa 900
Query: 901 tgtaaatgtgaatggtttatgatgtataatatatagttc 939
|||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tgtaaatgtgaatggtttatgatgtataatatatagttc 939
>At4g01026.1 68417.m00139 expressed protein
Length = 1127
Score = 351 bits (177), Expect = 7e-96
Identities = 399/473 (84%)
Strand = Plus / Plus
Query: 199 tgcagagaaaaccagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctc 258
|||||||| |||||||||||||||| ||| |||||| |||| |||||||| |||||||
Sbjct: 181 tgcagagagaaccagtgtacctctgttctcgtcaaatacattcaagctcctgttcatctt 240
Query: 259 gtttggtcacttgtacggagatttgatcagccgcagaaatacaaaccgtttgtgagcaga 318
||||||||||| || |||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 241 gtttggtcactggtgcggagatttgatcagccgcagaaatacaaaccatttataagcaga 300
Query: 319 tgtacagtaatcggtgatcctgaaatcggcagtcttagagaagtcaatgttaaatctggt 378
|| || |||| ||||||||||| ||||| |||| |||||||| ||||| |||||||||
Sbjct: 301 tgcactgtaaatggtgatcctgagatcggttgtctcagagaagtaaatgtcaaatctggt 360
Query: 379 cttcctgcaacaacatctactgagagattagaacttcttgatgatgaagaacacatcctc 438
||||| ||||| || ||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 361 cttccagcaaccaccagtacagagagattggaacagcttgatgatgaagaacacatcctc 420
Query: 439 ggtatcaaaatcatcggtggtgatcacagacttaagaattactcgtcgattttgacggtt 498
|||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 421 ggtatcaacatcattggtggtgatcatagacttaagaattactcttcgatcttgactgtg 480
Query: 499 catccggagataatcgagggaagagcaggaacgatggtgattgaatcgtttgtagttgat 558
||||||||||| || || ||||| ||||||| |||||||| || || ||||| || |||
Sbjct: 481 catccggagatgattgatggaaggtcaggaactatggtgatggagtcttttgttgtggat 540
Query: 559 gttcctcaaggtaacacaaaggatgagacttgctactttgttgaagcacttatcagatgt 618
||||||||||| ||||| || ||||| || || ||||| || ||| |||| || | |||
Sbjct: 541 gttcctcaaggcaacaccaaagatgatacatgttacttcgtggaatcactcataaagtgt 600
Query: 619 aatctcaagtcactagcagatgtttctgaaagattggcttctcaggacattac 671
|| ||||| || | || ||| ||||||||||||||| |||| ||||||||
Sbjct: 601 aacctcaaatccttggcttgtgtctctgaaagattggctgctcaagacattac 653
>At5g53160.2 68418.m06609 expressed protein similar to unknown protein
(pir||T02893)
Length = 1182
Score = 77.8 bits (39), Expect = 2e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 535 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 594
|||||||| || ||||| |||||||| || |||| |||||||||||||||||||| |||
Sbjct: 723 gtgattgagtcatttgtggttgatgtaccagaaggaaacacaaaggatgagacttgttac 782
Query: 595 tttgttgaagc 605
|||||||||||
Sbjct: 783 tttgttgaagc 793
Score = 61.9 bits (31), Expect = 9e-09
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 211 cagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctcgtttggtcactt 270
||||||| |||| | ||||| ||||| ||||| |||||| ||||| | || |||||||||
Sbjct: 399 cagtgtagctctacgcttgttaaacatatcaacgctcctgttcatattgtgtggtcactt 458
Query: 271 gtacggagatttgatcagccgcagaaatacaaaccgttt 309
|| | |||||||||||||| ||||| || || ||||||
Sbjct: 459 gtgagaagatttgatcagccacagaagtataagccgttt 497
Score = 42.1 bits (21), Expect = 0.008
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 440 gtatcaaaatcatcggtggtgatcacagacttaagaa 476
|||||| |||| | ||||||||||| |||||||||||
Sbjct: 628 gtatcagaatcgttggtggtgatcatagacttaagaa 664
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 gaaagagagagagagagaga 109
||||||||||||||||||||
Sbjct: 36 gaaagagagagagagagaga 17
Score = 40.1 bits (20), Expect = 0.033
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 90 gaaagagagagagagagagagaga 113
|||||||| |||||||||||||||
Sbjct: 42 gaaagagaaagagagagagagaga 19
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 97 agagagagagagagaga 113
|||||||||||||||||
Sbjct: 33 agagagagagagagaga 17
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 agagagagagagagaga 111
|||||||||||||||||
Sbjct: 33 agagagagagagagaga 17
>At5g53160.1 68418.m06608 expressed protein similar to unknown protein
(pir||T02893)
Length = 1262
Score = 77.8 bits (39), Expect = 2e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 535 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 594
|||||||| || ||||| |||||||| || |||| |||||||||||||||||||| |||
Sbjct: 803 gtgattgagtcatttgtggttgatgtaccagaaggaaacacaaaggatgagacttgttac 862
Query: 595 tttgttgaagc 605
|||||||||||
Sbjct: 863 tttgttgaagc 873
Score = 61.9 bits (31), Expect = 9e-09
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 211 cagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctcgtttggtcactt 270
||||||| |||| | ||||| ||||| ||||| |||||| ||||| | || |||||||||
Sbjct: 399 cagtgtagctctacgcttgttaaacatatcaacgctcctgttcatattgtgtggtcactt 458
Query: 271 gtacggagatttgatcagccgcagaaatacaaaccgttt 309
|| | |||||||||||||| ||||| || || ||||||
Sbjct: 459 gtgagaagatttgatcagccacagaagtataagccgttt 497
Score = 40.1 bits (20), Expect = 0.033
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 gaaagagagagagagagaga 109
||||||||||||||||||||
Sbjct: 36 gaaagagagagagagagaga 17
Score = 40.1 bits (20), Expect = 0.033
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 90 gaaagagagagagagagagagaga 113
|||||||| |||||||||||||||
Sbjct: 42 gaaagagaaagagagagagagaga 19
Score = 38.2 bits (19), Expect = 0.13
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 440 gtatcaaaatcatcggtggtgatcacagacttaag 474
|||||| |||| | ||||||||||| |||||||||
Sbjct: 628 gtatcagaatcgttggtggtgatcatagacttaag 662
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 97 agagagagagagagaga 113
|||||||||||||||||
Sbjct: 33 agagagagagagagaga 17
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 agagagagagagagaga 111
|||||||||||||||||
Sbjct: 33 agagagagagagagaga 17
>At4g27920.1 68417.m04007 expressed protein various predicted proteins
Length = 583
Score = 61.9 bits (31), Expect = 9e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 235 cacatcaaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcag 294
||||||||||||||||| |||||||| |||||| |||| ||||||| ||| | || ||
Sbjct: 100 cacatcaaagctcctctgcatctcgtgtggtcaattgtgaggagattcgatgaaccacaa 159
Query: 295 aaatacaaacc 305
|||||||||||
Sbjct: 160 aaatacaaacc 170
Score = 40.1 bits (20), Expect = 0.033
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 541 gaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgct 592
|||||||| || || ||||| || |||||||||||||||| ||||| ||||
Sbjct: 409 gaatcgttcgtggtggatgtgccggaaggtaacacaaaggaggagacatgct 460
Score = 36.2 bits (18), Expect = 0.52
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 454 ggtggtgatcacagacttaagaatta 479
||||||||||| ||||| ||||||||
Sbjct: 322 ggtggtgatcatagactcaagaatta 347
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,307
Number of Sequences: 29161
Number of extensions: 69307
Number of successful extensions: 11425
Number of sequences better than 10.0: 1372
length of query: 939
length of database: 44,058,232
effective HSP length: 18
effective length of query: 921
effective length of database: 43,533,334
effective search space: 40094200614
effective search space used: 40094200614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)