BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.26.C1
(1367 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type ... 2042 0.0
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type ... 1826 0.0
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type ... 1826 0.0
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finge... 60 5e-08
At5g66170.1 68418.m08336 senescence-associated family prote... 38 0.19
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING finger) family
protein similar to SP|O15541 Zinc finger protein 183
{Homo sapiens}; contains Pfam profiles PF04396: Protein
of unknown function, DUF537, PF00097: Zinc finger, C3HC4
type (RING finger), PF00642: Zinc finger C-x8-C-x5-C-x3-H
type (and similar)
Length = 1761
Score = 2042 bits (1030), Expect = 0.0
Identities = 1033/1034 (99%)
Strand = Plus / Plus
Query: 144 atgtcagattctggtgagcctaaaccttctcagcaagaagaacctctacctcaacctgct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtcagattctggtgagcctaaaccttctcagcaagaagaacctctacctcaacctgct 60
Query: 204 gcccaagaaactcagtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcccaagaaactcagtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaa 120
Query: 264 aacataagaaaaagaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacataagaaaaagaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagc 180
Query: 324 tctattctacaaaatctaaagaaagttgcaaaacccgatagcaagttatacttttcttct 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctattctacaaaatctaaagaaagttgcaaaacccgatagcaagttatacttttcttct 240
Query: 384 ggaccatctaagagttctactacaacgagtggagctcctgagaggtccgtctttcactac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaccatctaagagttctactacaacgagtggagctcctgagaggtccgtctttcactac 300
Query: 444 gattcatccaaggaaatccaggttcagaacgacagtggagcaacagcaacccttgaaact 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattcatccaaggaaatccaggttcagaacgacagtggagcaacagcaacccttgaaact 360
Query: 504 gagaccgacttcaatcaagacgcacgagctatccgtgagagagttcttaaaaaagcagac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagaccgacttcaatcaagacgcacgagctatccgtgagagagttcttaaaaaagcagac 420
Query: 564 gaagcattgaaagggaataagaaaaaggcttctgatgagaagctgtacaaaggaattcat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaagcattgaaagggaataagaaaaaggcttctgatgagaagctgtacaaaggaattcat 480
Query: 624 ggatatacagatcacaaagctgggtttagaagagaacaaacaatctcgagcgagaaagct 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggatatacagatcacaaagctgggtttagaagagaacaaacaatctcgagcgagaaagct 540
Query: 684 ggaggctcacacgggccattaagagcttctgctcacataagagtgtcggctagattcgat 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaggctcacacgggccattaagagcttctgctcacataagagtgtcggctagattcgat 600
Query: 744 taccagccagacatttgcaaggattacaaagaaaccggatactgtggatatggagattcg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taccagccagacatttgcaaggattacaaagaaaccggatactgtggatatggagattcg 660
Query: 804 tgtaagttcttgcatgaccgtggggattacaaaccaggatggcagatagagaaagagtgg 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtaagttcttgcatgaccgtggggattacaaaccaggatggcagatagagaaagagtgg 720
Query: 864 gaagaagcagagaaagttaggaagagaaataaagctatgggagttgaggatgaagatgat 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaagaagcagagaaagttaggaagagaaataaagctatgggagttgaggatgaagatgat 780
Query: 924 gaggctgacaaggatagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgc 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaggctgacaaggatagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgc 840
Query: 984 agggagccttttgttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agggagccttttgttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgt 900
Query: 1044 gctttaaagcatcacacgaagaacaagaagtgctttgtgtgtaaccaaccaacaatgggg 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gctttaaagcatcacacgaagaacaagaagtgctttgtgtgtaaccaaccaacaatgggg 960
Query: 1104 attttcaatgcagcacatgagatcaagaagagaatggctgaagaacggagtaaagctgaa 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 attttcaatgcagcacatgagatcaagaagagaatggctgaagaacggagtaaagctgaa 1020
Query: 1164 caaggattgtgaag 1177
||||||||| ||||
Sbjct: 1021 caaggattgcgaag 1034
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING finger) family
protein contains Pfam domains PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1993
Score = 1826 bits (921), Expect = 0.0
Identities = 1073/1122 (95%), Gaps = 15/1122 (1%)
Strand = Plus / Plus
Query: 217 agtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaaaacataagaaaaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 874 agtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaaaacataaggaaaa 933
Query: 277 gaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagctctattctacaaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 934 gaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagctctattttacaaa 993
Query: 337 atctaaagaaagttgcaaaacccgatagcaagttatacttttcttctggaccatctaaga 396
||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 994 atctaaagaaagttgcaaaacccgatagcaacttgtacttttcttctggaccatc----- 1048
Query: 397 gttctactacaacgagtggagctcctgagaggtccgtctttcactacgattcatccaagg 456
||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 1049 ----tactagaacgagtggagctcctgagagacccgtttttcactacgattcatccaagg 1104
Query: 457 aaatccaggttcagaacgacagtggagcaacagcaacccttgaaactgagaccgacttca 516
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1105 aaatccaggttcagaacgacagtggagcaacagcgacccttgaaactgaaaccgacttca 1164
Query: 517 atcaagacgcacgagctatccgtgagagagttcttaaaaaagcagacgaagcattgaaag 576
|||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||| |
Sbjct: 1165 atcaagacgctcgagctatccgtgaaagagttcttaaaaaagcagaccatgcattgaagg 1224
Query: 577 ggaataagaaaaaggcttctgatgagaagctgtacaaaggaattcatggatatacagatc 636
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ggaataagaaaaaggcttcagatgagaagctgtacaaaggaattcatggatatacagatc 1284
Query: 637 acaaagctgggtttagaagagaacaaacaatctcgagcgagaaagctggaggctcacacg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 acaaagctgggtttagaagagaacaaacaatctcgagcgagaaagctggaggctcacacg 1344
Query: 697 ggccattaagagcttctgctcacataagagtgtcggctagattcgattaccagccagaca 756
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1345 ggcctttaagagcttctgctcacatcagagtatcggctagattcgattaccagccagaca 1404
Query: 757 tttgcaaggattacaaagaaaccggatactgtggatatggagattcgtgtaagttcttgc 816
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 tttgcaaggattacaaggaaaccggatactgtggatatggagattcgtgtaagttcttgc 1464
Query: 817 atgaccgtggggattacaaaccaggatggcagatagagaaagagtgggaagaagcagaga 876
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 1465 atgaccgtggggattacaagccgggatggcagatagagaaagagtgggaagaggcagaga 1524
Query: 877 aagttaggaagagaaataaagctatgggagttgaggatgaagatgatgaggctgacaagg 936
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1525 aagttaggaagagaaataaagctatgggagttgaggatgacgatgatgaggctgacaagg 1584
Query: 937 atagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgcagggagccttttg 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 atagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgcagggagccttttc 1644
Query: 997 ttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgtgctttaaagcatc 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 ttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgtgctttaaagcatc 1704
Query: 1057 acacgaagaacaagaagtgctttgtgtgtaaccaaccaacaatggggattttcaatgcag 1116
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 acacgaagaacaagaaatgctttgtgtgtaaccaaccaacaatggggattttcaatgcag 1764
Query: 1117 cacatgagatcaagaagagaatggctgaagaacggagtaaagctgaacaaggattgtgaa 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 cacatgagatcaagaagagaatggctgaagaacggagtaaagctgaacaaggattgtgaa 1824
Query: 1177 gtccttgtttcactggacaaaaaggcaaaaactat--atttggttatttacttgaggaaa 1234
|||||| |||||| ||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 1825 gtccttctttcacaggacaaaaaggcaaaaactatacatttgattatttgcttgaggaaa 1884
Query: 1235 gctttttgttttgttgtactcactggcctatata-tattcattcggatgacgacgatagt 1293
|||||||||||||||||||||||||||||||||| | | |||||||| |||||| ||
Sbjct: 1885 gctttttgttttgttgtactcactggcctatatactgtatattcggat---gacgatggt 1941
Query: 1294 tgtttcaaactgattaacttttaaatttaaacaaactgaaaa 1335
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tgtttcaaactgattaacttttaaatttaaacaaactgaaaa 1983
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING finger) family
protein contains Pfam domains PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1415
Score = 1826 bits (921), Expect = 0.0
Identities = 1073/1122 (95%), Gaps = 15/1122 (1%)
Strand = Plus / Plus
Query: 217 agtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaaaacataagaaaaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 298 agtctcaacaagtttgcactttcttcaagaagccaacgaaaagtaaaaacataaggaaaa 357
Query: 277 gaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagctctattctacaaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 gaaccattgacgctgatgaagaagacggagattcgaaaagcgaaagctctattttacaaa 417
Query: 337 atctaaagaaagttgcaaaacccgatagcaagttatacttttcttctggaccatctaaga 396
||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 418 atctaaagaaagttgcaaaacccgatagcaacttgtacttttcttctggaccatc----- 472
Query: 397 gttctactacaacgagtggagctcctgagaggtccgtctttcactacgattcatccaagg 456
||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 473 ----tactagaacgagtggagctcctgagagacccgtttttcactacgattcatccaagg 528
Query: 457 aaatccaggttcagaacgacagtggagcaacagcaacccttgaaactgagaccgacttca 516
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 529 aaatccaggttcagaacgacagtggagcaacagcgacccttgaaactgaaaccgacttca 588
Query: 517 atcaagacgcacgagctatccgtgagagagttcttaaaaaagcagacgaagcattgaaag 576
|||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||| |
Sbjct: 589 atcaagacgctcgagctatccgtgaaagagttcttaaaaaagcagaccatgcattgaagg 648
Query: 577 ggaataagaaaaaggcttctgatgagaagctgtacaaaggaattcatggatatacagatc 636
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggaataagaaaaaggcttcagatgagaagctgtacaaaggaattcatggatatacagatc 708
Query: 637 acaaagctgggtttagaagagaacaaacaatctcgagcgagaaagctggaggctcacacg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 acaaagctgggtttagaagagaacaaacaatctcgagcgagaaagctggaggctcacacg 768
Query: 697 ggccattaagagcttctgctcacataagagtgtcggctagattcgattaccagccagaca 756
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 769 ggcctttaagagcttctgctcacatcagagtatcggctagattcgattaccagccagaca 828
Query: 757 tttgcaaggattacaaagaaaccggatactgtggatatggagattcgtgtaagttcttgc 816
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tttgcaaggattacaaggaaaccggatactgtggatatggagattcgtgtaagttcttgc 888
Query: 817 atgaccgtggggattacaaaccaggatggcagatagagaaagagtgggaagaagcagaga 876
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct: 889 atgaccgtggggattacaagccgggatggcagatagagaaagagtgggaagaggcagaga 948
Query: 877 aagttaggaagagaaataaagctatgggagttgaggatgaagatgatgaggctgacaagg 936
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 949 aagttaggaagagaaataaagctatgggagttgaggatgacgatgatgaggctgacaagg 1008
Query: 937 atagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgcagggagccttttg 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 atagcgacgaagacgaaaatgcattgccctttgcttgcttcatttgcagggagccttttc 1068
Query: 997 ttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgtgctttaaagcatc 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 ttgatccagttgtcaccaaatgcaagcattacttctgtgagcattgtgctttaaagcatc 1128
Query: 1057 acacgaagaacaagaagtgctttgtgtgtaaccaaccaacaatggggattttcaatgcag 1116
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 acacgaagaacaagaaatgctttgtgtgtaaccaaccaacaatggggattttcaatgcag 1188
Query: 1117 cacatgagatcaagaagagaatggctgaagaacggagtaaagctgaacaaggattgtgaa 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 cacatgagatcaagaagagaatggctgaagaacggagtaaagctgaacaaggattgtgaa 1248
Query: 1177 gtccttgtttcactggacaaaaaggcaaaaactat--atttggttatttacttgaggaaa 1234
|||||| |||||| ||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 1249 gtccttctttcacaggacaaaaaggcaaaaactatacatttgattatttgcttgaggaaa 1308
Query: 1235 gctttttgttttgttgtactcactggcctatata-tattcattcggatgacgacgatagt 1293
|||||||||||||||||||||||||||||||||| | | |||||||| |||||| ||
Sbjct: 1309 gctttttgttttgttgtactcactggcctatatactgtatattcggat---gacgatggt 1365
Query: 1294 tgtttcaaactgattaacttttaaatttaaacaaactgaaaa 1335
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 tgtttcaaactgattaacttttaaatttaaacaaactgaaaa 1407
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 711
Score = 60.0 bits (30), Expect = 5e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 999 gatccagttgtcaccaaatgcaagcattacttctgtgagcattgtgctttaaagcatcac 1058
||||| ||||||||||| ||||| ||||||||||| || | |||||| |||||||||||
Sbjct: 283 gatcctgttgtcaccaactgcaaccattacttctgcgacaagtgtgctctaaagcatcac 342
Query: 1059 ac 1060
||
Sbjct: 343 ac 344
>At5g66170.1 68418.m08336 senescence-associated family protein contains
similarity to ketoconazole resistant protein GI:928938
and senescence-associated protein GI:1046268 from
[Arabidopsis thaliana]
Length = 732
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 641 agctgggtttagaagagaa 659
|||||||||||||||||||
Sbjct: 423 agctgggtttagaagagaa 405
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,037
Number of Sequences: 29161
Number of extensions: 57037
Number of successful extensions: 1729
Number of sequences better than 10.0: 46
length of query: 1367
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1349
effective length of database: 43,533,334
effective search space: 58726467566
effective search space used: 58726467566
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)