BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.24.C1
(1864 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01300.1 68414.m00046 aspartyl protease family protein c... 3606 0.0
At3g61820.1 68416.m06939 aspartyl protease family protein c... 72 2e-11
At3g18490.1 68416.m02350 aspartyl protease family protein c... 50 7e-05
At3g61030.1 68416.m06828 C2 domain-containing protein simil... 42 0.017
At3g60950.1 68416.m06819 C2 domain-containing protein simil... 42 0.017
>At1g01300.1 68414.m00046 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1822
Score = 3606 bits (1819), Expect = 0.0
Identities = 1821/1822 (99%)
Strand = Plus / Plus
Query: 25 attattattataggaattgaaagaaaattaaattttcaaaaagaccgcttacttgtttat 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attattattataggaattgaaagaaaattaaattttcaaaaagaccgcttacttgtttat 60
Query: 85 tatatacacagagaagagaacagnctcactcgccactttcctcgagaaaacgaaaaaaaa 144
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatacacagagaagagaacagtctcactcgccactttcctcgagaaaacgaaaaaaaa 120
Query: 145 agatggtaggaagaagaaaagctttactcttttctctctgtttcttcttcctctctcttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatggtaggaagaagaaaagctttactcttttctctctgtttcttcttcctctctcttc 180
Query: 205 cttccttctcttcccttccatccttccaaaccctattccccaattctcattcccttcctt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttccttctcttcccttccatccttccaaaccctattccccaattctcattcccttcctt 240
Query: 265 gtgcttctcccgtctcattccaacccgactccgactccgagtcactgctagaatccgaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcttctcccgtctcattccaacccgactccgactccgagtcactgctagaatccgaat 300
Query: 325 ttgaatccggatccgactccgagtcttcttcttccattactctaaacctcgaccacatcg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgaatccggatccgactccgagtcttcttcttccattactctaaacctcgaccacatcg 360
Query: 385 atgctctctcctccaacaaaacacccgacgagctattcagctcccgtctccaacgtgact 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgctctctcctccaacaaaacacccgacgagctattcagctcccgtctccaacgtgact 420
Query: 445 cccggcgcgtgaaatctatcgccacactcgccgctcaaatccccggaagaaacgtgactc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccggcgcgtgaaatctatcgccacactcgccgctcaaatccccggaagaaacgtgactc 480
Query: 505 acgcgccacgacccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acgcgccacgacccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcg 540
Query: 565 gtgaatacttcacgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgaatacttcacgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcg 600
Query: 625 acaccggcagcgacatcgtctggctacaatgcgctccttgtcggagatgctactctcaat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaccggcagcgacatcgtctggctacaatgcgctccttgtcggagatgctactctcaat 660
Query: 685 ccgacccgatattcgacccgagaaaatccaagacctatgccacaatcccctgttcttcac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccgacccgatattcgacccgagaaaatccaagacctatgccacaatcccctgttcttcac 720
Query: 745 ctcactgccgccgattagactccgccggatgcaacacccgtcgtaagacttgtctctacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctcactgccgccgattagactccgccggatgcaacacccgtcgtaagacttgtctctacc 780
Query: 805 aagtctcttacggagatggttctttcaccgtcggcgatttctccaccgaaacgctaactt 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aagtctcttacggagatggttctttcaccgtcggcgatttctccaccgaaacgctaactt 840
Query: 865 tccggcgaaatcgcgttaaaggcgttgctctcggatgtggccacgacaacgaaggtctct 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tccggcgaaatcgcgttaaaggcgttgctctcggatgtggccacgacaacgaaggtctct 900
Query: 925 tcgtcggagccgccggtttattaggactcggtaaaggtaaattatcgttccccggtcaaa 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcgtcggagccgccggtttattaggactcggtaaaggtaaattatcgttccccggtcaaa 960
Query: 985 ccggtcaccggtttaatcagaaattctcttactgtttagtcgacagatccgcttcttcga 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ccggtcaccggtttaatcagaaattctcttactgtttagtcgacagatccgcttcttcga 1020
Query: 1045 aaccttcctcggtcgtcttcggaaacgccgccgtatcacgaatcgcgagattcacgccac 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aaccttcctcggtcgtcttcggaaacgccgccgtatcacgaatcgcgagattcacgccac 1080
Query: 1105 ttttgtcaaacccaaaactcgacactttctactacgtcgggcttctgggaattagcgtcg 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttttgtcaaacccaaaactcgacactttctactacgtcgggcttctgggaattagcgtcg 1140
Query: 1165 gagggacacgtgtccccggcgtaacggcttctctttttaaacttgaccagatcggtaacg 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gagggacacgtgtccccggcgtaacggcttctctttttaaacttgaccagatcggtaacg 1200
Query: 1225 gtggagttattatcgattcgggtacgtctgtgacccggttgatccgaccagcttatattg 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtggagttattatcgattcgggtacgtctgtgacccggttgatccgaccagcttatattg 1260
Query: 1285 ctatgagagacgcgttccgggtcggagctaagacattgaaaagagctccggatttctcac 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctatgagagacgcgttccgggtcggagctaagacattgaaaagagctccggatttctcac 1320
Query: 1345 tcttcgacacgtgtttcgatctctccaatatgaacgaggttaaagtaccgacggtggttt 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tcttcgacacgtgtttcgatctctccaatatgaacgaggttaaagtaccgacggtggttt 1380
Query: 1405 tacatttccgtggagctgacgtatcacttccggcgacgaattacctgatccctgtggata 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tacatttccgtggagctgacgtatcacttccggcgacgaattacctgatccctgtggata 1440
Query: 1465 ccaacggcaagttctgttttgcgtttgccggtacgatgggcggactatccataattggga 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ccaacggcaagttctgttttgcgtttgccggtacgatgggcggactatccataattggga 1500
Query: 1525 atatccagcaacagggtttccgggttgtatacgacttagcgagttcccgggtcgggtttg 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 atatccagcaacagggtttccgggttgtatacgacttagcgagttcccgggtcgggtttg 1560
Query: 1585 ctccaggaggatgcgcttaataattagatctgaccggagccggtacggataatgtacttt 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ctccaggaggatgcgcttaataattagatctgaccggagccggtacggataatgtacttt 1620
Query: 1645 tgttttctcaatttaatgcttagacttgttttttttttttttataaatcggacaagtgaa 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tgttttctcaatttaatgcttagacttgttttttttttttttataaatcggacaagtgaa 1680
Query: 1705 tctttaagcggtggagttgaatacgtgttgataaaatcttcacgtgttgtcggctgtatt 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tctttaagcggtggagttgaatacgtgttgataaaatcttcacgtgttgtcggctgtatt 1740
Query: 1765 attagtatcgtctttattttacatctcggaccaaagagagcgtgtatgattttctaaaaa 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 attagtatcgtctttattttacatctcggaccaaagagagcgtgtatgattttctaaaaa 1800
Query: 1825 attggcaattttacttttagtt 1846
||||||||||||||||||||||
Sbjct: 1801 attggcaattttacttttagtt 1822
>At3g61820.1 68416.m06939 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1827
Score = 71.9 bits (36), Expect = 2e-11
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 517 ccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcggtgaatacttca 576
|||||||||| ||| || |||| ||||||| ||||| ||||||||||| || || || |
Sbjct: 455 ccggtggatttagcggcgcagttatctctggcctctcacaaggaagcggagagtatttta 514
Query: 577 cgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcgacaccggcagcg 636
| | | ||||| || |||||||||| | |||||||||||||||||||| || ||||
Sbjct: 515 tgaggttaggtgttggaactccggcgactaacgtttacatggtgctcgacacaggaagcg 574
Query: 637 acatcgtctggctacaatgcgctccttg 664
|| |||| ||||| |||||| |||||||
Sbjct: 575 acgtcgtttggctccaatgctctccttg 602
Score = 54.0 bits (27), Expect = 4e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 789 aagacttgtctctaccaagtctcttacggagatggttctttcaccgtcggcgatttctcc 848
|||||||||||||||||||| || ||||| || || || ||||||| || ||||||||
Sbjct: 733 aagacttgtctctaccaagtatcgtacggtgacggatcattcaccgaaggagatttctca 792
Query: 849 accgaaacgct 859
|| ||||||||
Sbjct: 793 actgaaacgct 803
Score = 46.1 bits (23), Expect = 0.001
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 1475 gttctgttttgcgtttgccggtacgatgggcggactatccataattgggaatatccagca 1534
||||||||||||||||||||| || ||||| | | || || ||||| || || |||||
Sbjct: 1431 gttctgttttgcgtttgccggaactatggggagtttgtcaatcattggaaacatacagca 1490
Query: 1535 acagggtttccgggt 1549
||| |||||||||||
Sbjct: 1491 acaaggtttccgggt 1505
Score = 38.2 bits (19), Expect = 0.26
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1347 ttcgacacgtgtttcgatctctc 1369
|||||||||||||| ||||||||
Sbjct: 1303 ttcgacacgtgttttgatctctc 1325
Score = 34.2 bits (17), Expect = 4.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1005 aaattctcttactgttt 1021
|||||||||||||||||
Sbjct: 949 aaattctcttactgttt 965
>At3g18490.1 68416.m02350 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1914
Score = 50.1 bits (25), Expect = 7e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 900 tgtggccacgacaacgaaggtctcttcgtcggagccgccggttta 944
||||| |||||||||||||||||||| |||||| |||||||||
Sbjct: 887 tgtggtcacgacaacgaaggtctctttaccggagcagccggttta 931
Score = 48.1 bits (24), Expect = 3e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 795 tgtctctaccaagtctcttacggagatggttctttcaccgtcgg 838
|||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 779 tgtctctaccaagttagttacggagacggatctttcaccgtcgg 822
Score = 44.1 bits (22), Expect = 0.004
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1434 ccggcgacgaattacctgatccctgtggat 1463
||||||| |||||| |||||||||||||||
Sbjct: 1412 ccggcgaagaattatctgatccctgtggat 1441
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1123 tcgacactttctactacgtcgg 1144
||||||||||||||||||||||
Sbjct: 1098 tcgacactttctactacgtcgg 1119
Score = 40.1 bits (20), Expect = 0.066
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 551 ctctcaaggaagcggtgaatacttcacgcgcctcggtgtcggcactccggcgagatatgt 610
||||||||||||||| || || ||| | | |||||||||| |||||||||| | | |
Sbjct: 541 ctctcaaggaagcggcgagtatttctcaagaatcggtgtcggaactccggcgaaagagat 600
Query: 611 ttacatggtgctcgacaccggcagcgac 638
||| |||| ||||||||||| ||||||
Sbjct: 601 gtacttggttctcgacaccggaagcgac 628
>At3g61030.1 68416.m06828 C2 domain-containing protein similar to CLB1
[Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 1779
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 167 tttactcttttctctctgttt 187
|||||||||||||||||||||
Sbjct: 1400 tttactcttttctctctgttt 1380
>At3g60950.1 68416.m06819 C2 domain-containing protein similar to CLB1
[Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 1779
Score = 42.1 bits (21), Expect = 0.017
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 167 tttactcttttctctctgttt 187
|||||||||||||||||||||
Sbjct: 1400 tttactcttttctctctgttt 1380
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,869
Number of Sequences: 29161
Number of extensions: 96869
Number of successful extensions: 7452
Number of sequences better than 10.0: 301
length of query: 1864
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1846
effective length of database: 43,533,334
effective search space: 80362534564
effective search space used: 80362534564
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)