BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.23.C1
(968 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 pr... 1633 0.0
At1g68260.1 68414.m07797 thioesterase family protein contai... 36 0.53
At1g49730.2 68414.m05577 protein kinase family protein cont... 36 0.53
At1g49730.3 68414.m05576 protein kinase family protein cont... 36 0.53
At1g49730.1 68414.m05575 protein kinase family protein cont... 36 0.53
>At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein / molybdenum
cofactor biosynthesis enzyme CNX3 (CNX3) identical to
molybdopterin biosynthesis CNX3 protein SP|Q39056 from
[Arabidopsis thaliana]
Length = 1079
Score = 1633 bits (824), Expect = 0.0
Identities = 855/860 (99%), Gaps = 4/860 (0%)
Strand = Plus / Plus
Query: 1 atgatttcgacgctccgtcgcgccgtgtttctccgtcgatttccggcggtggttttctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14 atgatttcgacgctccgtcgcgccgtgtttctccgtcgatttccggcggtggttt-ctcc 72
Query: 61 gatcaaaagggctttcagcagtagaattgacgatgaattcgatccccaaatcatgaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 gatcaaaagggctttcagcagtagaattgacgatgaattcgatccccaaatcatgaatat 132
Query: 121 aaatgagctgaatcaggagatgcagtcaatctttggacaagaaccttctcccgatggtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaatgagctgaatcaggagatgcagtcaatctttggacaagaaccttctcccgatggtcc 192
Query: 181 tgggacaatggatttctctgagttgaaatcatccaaaatcgaacctttgagatcgaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgggacaatggatttctctgagttgaaatcatccaaaatcgaacctttgagatcgaagaa 252
Query: 241 tattgattttagacaacaaattgagtatcataaatctacacactcgagcaagaatgatgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 tattgattttagacaacaaattgagtatcataaatctacacactcgagcaagaatgattc 312
Query: 301 gcaagctatagaacaatatgcaaaagtggctagtgatatgtctaagctaacacatgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcaagctatagaacaatatgcaaaagtggctagtgatatgtctaagctaacacatgttgg 372
Query: 361 tatcgcaggggaagctcaaatggtggatgtttcttctaaggacaattccaagagaactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatcgcaggggaagctcaaatggtggatgtttcttctaaggacaattccaagagaactgc 432
Query: 421 attggcctgttgtaaagttattcttgggaaacgagtatttgatttggtcttagcgaatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 attggcctgttgtaaagttattcttgggaaacgagtatttgatttggtcttagcgaatca 492
Query: 481 aatggggaaaggagatgttcttggagtggcgaaaatagctgggatcaacggagcaaaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatggggaaaggagatgttcttggagtggcgaaaatagctgggatcaacggagcaaaaca 552
Query: 541 aaccagcagcttaataccattgtgtcataacattgctcttacgcatgttcgtgtagactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaccagcagcttaataccattgtgtcataacattgctcttacgcatgttcgtgtagactt 612
Query: 601 acgactaaaccctgaggattttagtgttgacatttgaaggagaagctttcttgcacttgg 660
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct: 613 acgactaaaccctgaggattttagtgttgaca-ttgaaggagaagc-ttcttgcac-tgg 669
Query: 661 aaaaaccggagttgagatggaagctatgactgctgtatcagttgctggtttgactgttta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaaaccggagttgagatggaagctatgactgctgtatcagttgctggtttgactgttta 729
Query: 721 cgatatgtgtaaggctgcttccaaagatatcagtattacagacgtgaggctcgagcgtaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cgatatgtgtaaggctgcttccaaagatatcagtattacagacgtgaggctcgagcgtaa 789
Query: 781 aactggtggaaagagcgggtcttggtctagactctagaggggactgaacacattcaacat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aactggtggaaagagcgggtcttggtctagactctagaggggactgaacacattcaacat 849
Query: 841 ttgcctctgttgctataaag 860
||||||||||||||||||||
Sbjct: 850 ttgcctctgttgctataaag 869
>At1g68260.1 68414.m07797 thioesterase family protein contains Pfam profile:
PF03061: thioesterase family protein
Length = 790
Score = 36.2 bits (18), Expect = 0.53
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 224 cctttgagatcgaagaat 241
||||||||||||||||||
Sbjct: 161 cctttgagatcgaagaat 144
>At1g49730.2 68414.m05577 protein kinase family protein contains Pfam PF00069:
Protein kinase domain; similar to AtPK2324 (GI:1785621)
[Arabidopsis thaliana]; similar to receptor-like protein
kinase (GI:1644291) [Catharanthus roseus]; similar to
somatic embryogenesis receptor-like kinase (GI:2224911)
[Daucus carota]
Length = 2367
Score = 36.2 bits (18), Expect = 0.53
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 835 caacatttgcctctgttg 852
||||||||||||||||||
Sbjct: 181 caacatttgcctctgttg 164
>At1g49730.3 68414.m05576 protein kinase family protein contains Pfam PF00069:
Protein kinase domain; similar to AtPK2324 (GI:1785621)
[Arabidopsis thaliana]; similar to receptor-like protein
kinase (GI:1644291) [Catharanthus roseus]; similar to
somatic embryogenesis receptor-like kinase (GI:2224911)
[Daucus carota]
Length = 2552
Score = 36.2 bits (18), Expect = 0.53
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 835 caacatttgcctctgttg 852
||||||||||||||||||
Sbjct: 366 caacatttgcctctgttg 349
>At1g49730.1 68414.m05575 protein kinase family protein contains Pfam PF00069:
Protein kinase domain; similar to AtPK2324 (GI:1785621)
[Arabidopsis thaliana]; similar to receptor-like protein
kinase (GI:1644291) [Catharanthus roseus]; similar to
somatic embryogenesis receptor-like kinase (GI:2224911)
[Daucus carota]
Length = 2258
Score = 36.2 bits (18), Expect = 0.53
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 835 caacatttgcctctgttg 852
||||||||||||||||||
Sbjct: 176 caacatttgcctctgttg 159
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,896
Number of Sequences: 29161
Number of extensions: 27896
Number of successful extensions: 639
Number of sequences better than 10.0: 53
length of query: 968
length of database: 44,058,232
effective HSP length: 18
effective length of query: 950
effective length of database: 43,533,334
effective search space: 41356667300
effective search space used: 41356667300
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)